Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KP004_RS19230 Genome accession   NZ_CP076723
Coordinates   4412461..4412901 (+) Length   146 a.a.
NCBI ID   WP_216500083.1    Uniprot ID   -
Organism   Geomonas oryzisoli strain RG10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4407461..4417901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP004_RS19210 (KP004_19210) - 4409220..4410896 (-) 1677 WP_216799996.1 ribonuclease J -
  KP004_RS19215 (KP004_19215) - 4411039..4411434 (-) 396 WP_216799997.1 hypothetical protein -
  KP004_RS19220 (KP004_19220) - 4411465..4411647 (-) 183 WP_216799998.1 hypothetical protein -
  KP004_RS19225 (KP004_19225) - 4411647..4412342 (-) 696 WP_216799999.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  KP004_RS19230 (KP004_19230) ssb 4412461..4412901 (+) 441 WP_216500083.1 single-stranded DNA-binding protein Machinery gene
  KP004_RS19235 (KP004_19235) - 4413015..4416575 (-) 3561 WP_216800000.1 LamG-like jellyroll fold domain-containing protein -
  KP004_RS19240 (KP004_19240) - 4416920..4417363 (-) 444 WP_216800001.1 hypothetical protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16191.04 Da        Isoelectric Point: 5.3193

>NTDB_id=577625 KP004_RS19230 WP_216500083.1 4412461..4412901(+) (ssb) [Geomonas oryzisoli strain RG10]
MASLNKVMLIGNLGKDPEVRYTAGGTAVASFSLATTDRIKGKDGNWEDKTEWHNITLWARLAEIAGEYLSKGKTVYIEGR
LQTRKWTDKDGKDRYTTEIVGEKMQMLSAKGEGGGQRQGGGRPQQDYNQGGGYEEPVFNPDDEIPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=577625 KP004_RS19230 WP_216500083.1 4412461..4412901(+) (ssb) [Geomonas oryzisoli strain RG10]
ATGGCAAGTCTCAACAAGGTGATGCTCATAGGCAACCTGGGCAAGGACCCCGAGGTGCGCTACACCGCCGGCGGTACCGC
CGTAGCCTCCTTCTCCCTGGCCACCACCGACCGCATCAAGGGCAAGGACGGCAACTGGGAAGACAAGACCGAATGGCACA
ACATCACCCTCTGGGCGCGTCTTGCCGAGATCGCCGGCGAGTACCTCTCCAAGGGGAAGACCGTATATATCGAGGGACGT
CTACAGACCCGCAAGTGGACCGACAAGGACGGCAAGGACCGCTACACCACCGAGATCGTCGGTGAGAAGATGCAGATGCT
TTCCGCCAAGGGCGAAGGCGGCGGCCAGCGCCAGGGCGGCGGCAGGCCCCAGCAGGATTACAACCAGGGCGGCGGTTACG
AGGAGCCGGTGTTCAACCCGGACGACGAGATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.458

100

0.575
  ssb Glaesserella parasuis strain SC1401

42.778

100

0.527
  ssb Neisseria meningitidis MC58

49.231

89.041

0.438
  ssb Neisseria gonorrhoeae MS11

53.097

77.397

0.411
  ssbA Bacillus subtilis subsp. subtilis str. 168

32.37

100

0.384