Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   KQ224_RS11525 Genome accession   NZ_CP076721
Coordinates   1511970..1512653 (-) Length   227 a.a.
NCBI ID   WP_174846438.1    Uniprot ID   -
Organism   Streptococcus parasuis strain H35     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1506970..1517653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ224_RS07885 (KQ224_07885) - 1507366..1507722 (+) 357 WP_174846430.1 M23 family metallopeptidase -
  KQ224_RS07890 (KQ224_07890) lgt 1507802..1508686 (+) 885 WP_174846431.1 prolipoprotein diacylglyceryl transferase -
  KQ224_RS07895 (KQ224_07895) - 1508689..1508922 (+) 234 WP_171989918.1 SHOCT domain-containing protein -
  KQ224_RS07900 (KQ224_07900) - 1509197..1510405 (+) 1209 WP_174846432.1 YncE family protein -
  KQ224_RS07905 (KQ224_07905) - 1510576..1511973 (-) 1398 WP_174846433.1 cell wall metabolism sensor histidine kinase WalK -
  KQ224_RS11525 vicR 1511970..1512653 (-) 684 WP_174846438.1 response regulator transcription factor Regulator
  KQ224_RS11715 - 1512689..1512859 (-) 171 WP_315863162.1 multicopper oxidase domain-containing protein -
  KQ224_RS11535 - 1512813..1513046 (-) 234 Protein_1529 multicopper oxidase domain-containing protein -
  KQ224_RS07915 (KQ224_07915) - 1513254..1513463 (+) 210 Protein_1530 hypothetical protein -
  KQ224_RS07925 (KQ224_07925) - 1514883..1516325 (+) 1443 WP_174846724.1 multicopper oxidase family protein -
  KQ224_RS07930 (KQ224_07930) - 1516406..1517500 (+) 1095 Protein_1533 IS3 family transposase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25694.80 Da        Isoelectric Point: 5.0348

>NTDB_id=577615 KQ224_RS11525 WP_174846438.1 1511970..1512653(-) (vicR) [Streptococcus parasuis strain H35]
MKILIVDDEASILNIVEAYLSAKGYQVFRALSGNEALTKVDVVQPDLIVLDLMLPGLSGLEVCKKIRDSSTVPIIMLTAK
TAEKDILEGLSLGADDYITKPFSPKELVARVETVLRRVQPEYREEKWSFEEGLLVIYPDRKQVFKRGEEIILTPTEYALL
ALLASHPMRLFSREQLLDAVKGLDFDGTDRVIDTHIKNIRQKIEDDTRNPYFILTAYGMGYRFGGQK

Nucleotide


Download         Length: 684 bp        

>NTDB_id=577615 KQ224_RS11525 WP_174846438.1 1511970..1512653(-) (vicR) [Streptococcus parasuis strain H35]
GTGAAGATTTTAATTGTGGACGACGAAGCAAGCATTCTGAATATCGTGGAAGCCTATTTGAGTGCAAAAGGCTATCAAGT
GTTTCGCGCTTTGAGCGGAAACGAGGCTTTAACAAAGGTTGATGTTGTCCAACCTGACTTGATTGTGTTGGATCTCATGC
TGCCTGGTTTATCTGGCCTCGAAGTCTGTAAAAAAATAAGGGACTCCTCCACTGTACCGATTATCATGTTGACTGCGAAA
ACAGCCGAAAAAGATATCTTGGAAGGGTTAAGCCTGGGGGCTGATGACTACATCACAAAACCATTCAGCCCGAAAGAGCT
GGTTGCTCGGGTCGAAACCGTTTTACGCCGTGTCCAACCAGAATACCGAGAAGAAAAGTGGTCTTTCGAAGAAGGTTTGC
TGGTTATCTACCCGGATCGAAAACAAGTATTCAAACGAGGTGAAGAAATCATTTTGACCCCGACCGAGTATGCTTTATTA
GCCCTTCTGGCCTCACATCCAATGCGCCTATTTTCACGGGAACAGCTGCTGGACGCTGTGAAAGGACTCGATTTTGATGG
AACGGATCGGGTGATCGATACCCACATCAAAAATATCCGTCAAAAAATTGAGGACGACACGCGCAACCCCTACTTCATCT
TAACCGCATATGGAATGGGGTATCGATTTGGTGGTCAAAAATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

48.458

100

0.485
  micA Streptococcus pneumoniae Cp1015

48.23

99.559

0.48
  scnR Streptococcus mutans UA159

37.826

100

0.383
  covR Lactococcus lactis subsp. lactis strain DGCC12653

38.839

98.678

0.383
  covR Streptococcus salivarius strain HSISS4

38.393

98.678

0.379