Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   KQ224_RS06350 Genome accession   NZ_CP076721
Coordinates   1238512..1239414 (-) Length   300 a.a.
NCBI ID   WP_174846494.1    Uniprot ID   -
Organism   Streptococcus parasuis strain H35     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1233512..1244414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ224_RS06340 (KQ224_06340) - 1235380..1236900 (-) 1521 WP_216806246.1 quinol oxidase -
  KQ224_RS06345 (KQ224_06345) - 1237084..1238304 (-) 1221 WP_216806247.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  KQ224_RS06350 (KQ224_06350) comR 1238512..1239414 (-) 903 WP_174846494.1 transcriptional regulator Regulator
  KQ224_RS06355 (KQ224_06355) - 1239570..1240184 (-) 615 WP_216806248.1 HAD-IA family hydrolase -
  KQ224_RS06360 (KQ224_06360) - 1240186..1240932 (-) 747 WP_171989018.1 GNAT family N-acetyltransferase -
  KQ224_RS06365 (KQ224_06365) ruvB 1240932..1241930 (-) 999 WP_171989019.1 Holliday junction branch migration DNA helicase RuvB -
  KQ224_RS06370 (KQ224_06370) - 1242058..1242717 (+) 660 WP_171989053.1 amino acid ABC transporter permease -
  KQ224_RS06375 (KQ224_06375) - 1242698..1243375 (+) 678 WP_171989020.1 amino acid ABC transporter permease -
  KQ224_RS06380 (KQ224_06380) - 1243380..1244126 (+) 747 WP_216806249.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 35893.83 Da        Isoelectric Point: 4.6406

>NTDB_id=577585 KQ224_RS06350 WP_174846494.1 1238512..1239414(-) (comR) [Streptococcus parasuis strain H35]
MNDKEFGQRVRYLREKLAITREEFCEDELELSVRQLSRIEAGQCKPTFSKIGFIASRLNMGLYELMPDYVQLPERYSRLK
YEVLRTPTYGDQFLVEQRNQMLTIIYDEYYDELPEEEKIAIDAFQSTIDVFETRSNQFGKEILDDYFEQVHRKEKYSIND
LLIIRLYLEHIRDRDTDATIYHYFSSLVTHLPNQQEVMDSKELFILRDVILISIGILGDREDYEKIPSLFDALDKIMVLT
QDFQKKPILNLLKWKYELHVNKNRDAAQSYFEEATLFAKLIGNDYLVHKIKEDWEEDSRL

Nucleotide


Download         Length: 903 bp        

>NTDB_id=577585 KQ224_RS06350 WP_174846494.1 1238512..1239414(-) (comR) [Streptococcus parasuis strain H35]
GTGAACGATAAGGAATTTGGGCAACGTGTGAGATATTTACGGGAGAAATTAGCAATTACGCGTGAAGAATTCTGTGAAGA
TGAACTAGAATTATCTGTTCGTCAATTGAGTCGTATAGAAGCGGGACAATGCAAACCAACTTTTTCAAAGATAGGTTTTA
TAGCAAGCAGGTTGAATATGGGTTTATATGAGCTTATGCCGGATTATGTCCAACTTCCGGAACGCTATTCGCGTCTAAAA
TATGAGGTATTACGAACTCCTACCTATGGAGACCAATTTTTGGTAGAACAACGCAATCAAATGTTGACAATCATTTACGA
TGAATATTACGATGAGCTCCCAGAAGAAGAAAAAATAGCTATTGATGCTTTTCAGTCGACAATTGATGTATTTGAAACAC
GGTCTAATCAATTTGGCAAAGAGATTTTGGACGATTATTTTGAACAAGTTCATCGTAAAGAAAAGTATTCGATAAATGAC
TTGTTAATCATTCGACTATACCTTGAGCATATTAGAGATAGGGACACTGACGCAACAATCTATCACTATTTTTCCTCACT
TGTTACCCACCTGCCTAATCAACAGGAGGTAATGGATTCAAAAGAGTTATTTATTCTAAGGGATGTTATATTAATCTCAA
TAGGGATTTTAGGAGATCGAGAAGACTATGAGAAAATCCCGTCTCTTTTTGATGCTTTAGATAAAATAATGGTTTTAACT
CAAGATTTTCAAAAGAAACCTATTTTAAACTTATTGAAGTGGAAATACGAGCTCCACGTTAATAAGAACAGAGATGCCGC
ACAGAGTTACTTTGAAGAAGCTACCCTTTTTGCGAAGCTAATTGGAAATGATTATCTAGTTCACAAAATTAAAGAAGACT
GGGAAGAGGATTCACGACTTTAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(73-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

61.873

99.667

0.617
  comR Streptococcus suis 05ZYH33

61.873

99.667

0.617
  comR Streptococcus suis D9

56.478

100

0.567
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

42.215

96.333

0.407
  comR Streptococcus mutans UA159

40.134

99.667

0.4
  comR Streptococcus pyogenes MGAS8232

39.13

99.667

0.39