Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   KRG72_RS08230 Genome accession   NZ_CP076703
Coordinates   1659827..1661203 (-) Length   458 a.a.
NCBI ID   WP_258254909.1    Uniprot ID   -
Organism   Streptococcus equinus strain S1     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1654827..1666203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS08205 (KRG72_08215) - 1655949..1656581 (-) 633 WP_006531896.1 thiamine diphosphokinase -
  KRG72_RS08210 (KRG72_08220) rpe 1656574..1657236 (-) 663 WP_006531895.1 ribulose-phosphate 3-epimerase -
  KRG72_RS08215 (KRG72_08225) rsgA 1657243..1658115 (-) 873 WP_006531894.1 ribosome small subunit-dependent GTPase A -
  KRG72_RS08225 (KRG72_08235) comE/comE2 1658432..1659166 (-) 735 WP_258254908.1 LytTR family DNA-binding domain-containing protein Regulator
  KRG72_RS08230 (KRG72_08240) comD/comD3 1659827..1661203 (-) 1377 WP_258254909.1 GHKL domain-containing protein Regulator
  KRG72_RS08235 (KRG72_08245) comD/comD3 1661200..1662282 (-) 1083 WP_258254910.1 sensor histidine kinase Regulator
  KRG72_RS08240 comD/comD3 1662588..1663367 (-) 780 WP_258254911.1 sensor histidine kinase Regulator
  KRG72_RS08245 (KRG72_08255) - 1664115..1664408 (-) 294 WP_205395459.1 bacteriocin immunity protein -
  KRG72_RS08250 (KRG72_08260) - 1664436..1664741 (-) 306 WP_133018012.1 bacteriocin immunity protein -
  KRG72_RS08255 (KRG72_08265) - 1664754..1664903 (-) 150 WP_039696228.1 hypothetical protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 53075.32 Da        Isoelectric Point: 6.1833

>NTDB_id=577480 KRG72_RS08230 WP_258254909.1 1659827..1661203(-) (comD/comD3) [Streptococcus equinus strain S1]
MIEIVVFIITMLLNFVGFVIVGILFQQITKVKLTFLEWVLIIIFLQAVSFFMNPQKYSMVALVLMKDISVIFCLLSVSFH
HNPKIGIRYHIFYALYPINLYMILHEVYCYIIFAIFSIQLTSLTMTSPSVGKMIGMITAVIIPPIFYYLISKWLNIDISN
VRKTLKNYLSARALRFVNVLLLLFYPGMECFGAIAPFEKMSMNRNIYRAVIFIYFILLFIFLFYLNFRHGQEQKEELLRN
QEMELTALENYSKHVESLYQEVRSFRHDYANILMSLKMGIDQGNLDDIKKIYEEITADSTKLVKNNKFDLTRLANITDSG
VKSLMSAKFLQAENQGIEISLEVAEEMENPKIPLISYIRILSILFDNAIEAALESETPKISVANFYQDGDFVFMIENSSK
EKSVDLTKIFERGYSTKGDNRGIGLATLMDFQDDYENLSVETRSSDYKFTQVVRIYEA

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=577480 KRG72_RS08230 WP_258254909.1 1659827..1661203(-) (comD/comD3) [Streptococcus equinus strain S1]
ATGATTGAGATTGTTGTATTTATTATTACAATGCTTTTGAATTTTGTGGGATTCGTTATAGTAGGGATTCTATTTCAACA
AATAACAAAGGTTAAATTAACGTTTTTAGAATGGGTATTGATAATCATATTTCTTCAAGCAGTTTCTTTTTTTATGAATC
CTCAGAAATATTCAATGGTTGCTTTAGTACTAATGAAAGATATTTCAGTGATTTTTTGTTTACTATCAGTTTCTTTTCAT
CATAATCCCAAAATAGGAATAAGATATCACATTTTTTATGCCTTGTATCCAATTAATCTTTATATGATTCTACACGAAGT
TTATTGTTATATTATATTTGCAATTTTTTCAATACAATTGACCTCACTTACAATGACTTCACCATCAGTAGGAAAAATGA
TTGGTATGATAACTGCAGTTATTATTCCACCAATTTTTTACTATCTAATATCAAAGTGGCTTAACATTGATATTTCAAAT
GTCAGAAAAACGCTCAAGAATTATCTTAGTGCAAGAGCGCTTAGATTTGTTAATGTATTATTACTACTTTTCTATCCAGG
AATGGAATGTTTTGGTGCCATAGCCCCTTTTGAGAAAATGTCGATGAATAGAAATATTTATAGGGCTGTTATTTTTATCT
ACTTCATCCTTCTTTTCATTTTCCTCTTTTACCTCAACTTCCGCCATGGTCAGGAGCAAAAAGAAGAACTGTTGCGTAAT
CAGGAAATGGAGCTGACAGCGCTTGAGAATTATAGTAAACACGTAGAGAGTCTTTATCAGGAAGTGCGCAGTTTCAGGCA
TGACTACGCTAATATTCTGATGAGTTTAAAAATGGGGATTGACCAAGGCAATCTTGATGACATCAAGAAAATTTACGAGG
AAATCACAGCCGATTCAACGAAACTGGTCAAAAATAATAAGTTTGACTTGACTCGCTTGGCTAACATCACAGACAGCGGC
GTCAAAAGTCTCATGTCAGCTAAGTTTTTGCAAGCTGAAAATCAGGGCATCGAGATTAGCCTAGAAGTTGCTGAAGAAAT
GGAAAATCCCAAAATTCCTTTGATTTCTTATATCCGCATCTTATCAATCCTTTTCGACAATGCTATTGAAGCAGCTTTGG
AGTCTGAAACTCCCAAAATTTCCGTGGCTAATTTCTACCAAGATGGTGATTTTGTTTTCATGATTGAAAATTCAAGTAAG
GAAAAATCAGTAGATTTAACTAAGATTTTTGAGCGTGGCTACTCAACCAAAGGAGATAATCGCGGAATTGGTCTGGCAAC
ACTGATGGATTTCCAAGATGACTACGAAAATTTGTCGGTTGAAACCCGCAGTTCAGATTATAAATTTACACAAGTAGTGA
GAATTTACGAGGCATAA

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(358-455)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

96.507

100

0.965
  comD/comD2 Streptococcus equinus JB1

78.526

68.122

0.535