Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MQV61_RS16215 Genome accession   NZ_CP094339
Coordinates   3243838..3244467 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0H2V5S2
Organism   Escherichia coli strain W224N     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3238838..3249467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQV61_RS16200 helD 3239080..3241134 (-) 2055 WP_001350178.1 DNA helicase IV -
  MQV61_RS16205 yccF 3241257..3241703 (+) 447 WP_001261236.1 YccF domain-containing protein -
  MQV61_RS16210 yccS 3241713..3243875 (+) 2163 WP_166709532.1 YccS family putative transporter -
  MQV61_RS16215 sxy/tfoX 3243838..3244467 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MQV61_RS16220 sulA 3244686..3245195 (+) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  MQV61_RS16225 ompA 3245551..3246591 (+) 1041 WP_001350588.1 porin OmpA -
  MQV61_RS16230 matP 3246669..3247121 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  MQV61_RS16235 ycbZ 3247307..3249067 (+) 1761 WP_000156501.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=577450 MQV61_RS16215 WP_000839136.1 3243838..3244467(-) (sxy/tfoX) [Escherichia coli strain W224N]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=577450 MQV61_RS16215 WP_000839136.1 3243838..3244467(-) (sxy/tfoX) [Escherichia coli strain W224N]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2V5S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99