Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KP808_RS00925 Genome accession   NZ_CP076652
Coordinates   195387..196880 (+) Length   497 a.a.
NCBI ID   WP_230017283.1    Uniprot ID   -
Organism   Pseudomonas savastanoi strain MHT1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 190387..201880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP808_RS00915 (KP808_00905) - 193552..194523 (-) 972 WP_230017281.1 hypothetical protein -
  KP808_RS00920 (KP808_00910) - 194667..195209 (-) 543 WP_230017282.1 GNAT family N-acetyltransferase -
  KP808_RS00925 (KP808_00915) comM 195387..196880 (+) 1494 WP_230017283.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KP808_RS00930 (KP808_00920) - 196941..197789 (-) 849 WP_058402714.1 aminotransferase class IV -
  KP808_RS00935 (KP808_00925) - 197838..198725 (-) 888 WP_058409290.1 hypothetical protein -
  KP808_RS00940 (KP808_00930) - 198738..199673 (-) 936 WP_230017284.1 hypothetical protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53034.82 Da        Isoelectric Point: 7.5248

>NTDB_id=576948 KP808_RS00925 WP_230017283.1 195387..196880(+) (comM) [Pseudomonas savastanoi strain MHT1]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPALTLVGLPEGAVKESKDRVRSAILNSGLDFPARRITLNLAPADLPKDGGR
FDLAIALGLLAASGQVPLVALQDVECLGELALSGAIRPIQGVLPAALAARAAERTLIIPAVNAEEACLASGLRVIAVSHL
LELVAHFNGRTVIAPYQSSGLLHQPKPYPDLSEVQGQTAAKRALVIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVASQVPLTSWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYLGEPTGRCRCSTEQVQRYRNKLSGPLLDRIDLHLTVAREATALNPDPTT
SENTASAAAVVAEARHRQQRRQGCANAFLDLPGLREYCALSSVDESWLETACERLTLSLRSAHRLLKVARTLADLEQVDA
ISRSHLAEALQYRPSNN

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=576948 KP808_RS00925 WP_230017283.1 195387..196880(+) (comM) [Pseudomonas savastanoi strain MHT1]
ATGTCGCTGGCTATCGTCCATAGTCGTGCCCAGGTCGGGGTGGAAGCCCCGGCGGTTACTGTTGAAGCGCATCTGGCCAA
CGGCCTGCCGGCCCTGACGCTGGTGGGGTTGCCGGAGGGGGCGGTCAAGGAGAGCAAGGACCGGGTGCGCAGTGCCATTC
TCAATTCCGGGCTGGATTTTCCGGCGCGGCGGATCACGCTCAACCTCGCGCCTGCTGATTTGCCCAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCGCTGGGTTTGCTGGCTGCCAGCGGGCAGGTGCCGCTGGTTGCGTTGCAGGATGTTGAATGCCT
GGGCGAGCTGGCGTTATCGGGGGCGATTCGGCCGATTCAGGGTGTGCTGCCTGCTGCGCTGGCGGCGCGTGCGGCGGAGC
GGACGCTGATCATTCCGGCGGTGAACGCCGAGGAAGCGTGCCTGGCGTCGGGGCTGCGGGTGATTGCGGTGAGCCACTTG
CTGGAGTTGGTCGCGCATTTCAACGGGCGCACGGTGATTGCCCCTTATCAGTCCAGCGGTTTGCTGCATCAGCCCAAGCC
GTATCCGGACCTTAGCGAAGTGCAGGGCCAGACCGCCGCGAAGCGTGCCTTGGTGATTGCCGCTGCGGGGGCGCATAACC
TGCTGTTCAGCGGGCCGCCCGGCACTGGCAAGACGCTGCTCGCCAGTCGCCTGCCGGGTTTGTTGCCGCCGCTGGACGAG
CATGAAGCGCTGGAGGTGGCGGCGATTCAGTCGGTTGCCAGTCAGGTGCCGCTGACCAGTTGGCCGCAGCGGCCGTTTCG
CCAGCCGCATCACTCGGCGTCCGGGCCTGCGTTGGTGGGCGGTGGCAGTCGTCCGCAACCTGGCGAGATCACGTTGGCGC
ATCACGGCGTTCTATTCCTTGATGAGTTGCCGGAGTTCGACCGCCGCGTGCTGGAGGTTTTGCGTGAGCCGTTAGAGTCC
GGGCATATCGTGATTTCCCGGGCGCGGGATCGCGTGCGCTTTCCGGCGAGGTTCCAGTTGGTGGCGGCGATGAACCCGTG
TCCCTGTGGCTATCTCGGTGAGCCGACCGGGCGCTGCCGCTGTTCCACTGAGCAGGTGCAGCGCTATCGCAACAAGTTGT
CCGGCCCGCTGCTGGACCGCATCGACCTGCACCTGACCGTCGCCCGAGAAGCCACCGCCCTCAACCCTGACCCGACCACC
AGTGAAAACACCGCCAGTGCCGCAGCCGTGGTCGCTGAGGCGAGACACCGTCAGCAACGTCGTCAGGGCTGTGCCAATGC
GTTTCTCGATCTGCCGGGGCTGCGTGAGTACTGCGCGCTGTCCAGTGTCGATGAAAGCTGGCTGGAGACGGCGTGCGAGC
GTCTGACCCTGTCGTTGCGCTCGGCGCATCGATTGCTGAAGGTGGCGCGGACTTTGGCGGATCTGGAGCAGGTGGACGCG
ATCAGCCGCAGTCATCTGGCCGAGGCGTTGCAATATCGGCCTTCGAATAATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.747

99.598

0.545
  comM Glaesserella parasuis strain SC1401

54

100

0.543
  comM Vibrio campbellii strain DS40M4

53.737

99.598

0.535
  comM Haemophilus influenzae Rd KW20

53

100

0.533
  comM Legionella pneumophila str. Paris

48.713

100

0.495
  comM Legionella pneumophila strain ERS1305867

48.713

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.418

100

0.459