Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KNV97_RS18550 Genome accession   NZ_CP076643
Coordinates   2702725..2704248 (-) Length   507 a.a.
NCBI ID   WP_218562555.1    Uniprot ID   A0A975YN70
Organism   Vibrio ostreae strain OG9-811     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2697725..2709248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNV97_RS18525 (KNV97_18525) - 2697890..2698156 (+) 267 WP_168797067.1 YihD family protein -
  KNV97_RS18530 (KNV97_18530) ccoG 2698406..2699830 (+) 1425 WP_218562553.1 cytochrome c oxidase accessory protein CcoG -
  KNV97_RS18535 (KNV97_18535) - 2699890..2700876 (+) 987 WP_136487753.1 serine/threonine protein kinase -
  KNV97_RS18540 (KNV97_18540) - 2700909..2701508 (+) 600 WP_136487752.1 thiol:disulfide interchange protein DsbA/DsbL -
  KNV97_RS18545 (KNV97_18545) - 2701673..2702611 (-) 939 WP_218562554.1 acyltransferase -
  KNV97_RS18550 (KNV97_18550) comM 2702725..2704248 (-) 1524 WP_218562555.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KNV97_RS18555 (KNV97_18555) ilvG 2704735..2706381 (+) 1647 WP_136487749.1 acetolactate synthase 2 catalytic subunit -
  KNV97_RS18560 (KNV97_18560) ilvM 2706394..2706678 (+) 285 WP_136487748.1 acetolactate synthase 2 small subunit -
  KNV97_RS18565 (KNV97_18565) ilvD 2706691..2708532 (+) 1842 WP_218562556.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55150.15 Da        Isoelectric Point: 7.4332

>NTDB_id=576830 KNV97_RS18550 WP_218562555.1 2702725..2704248(-) (comM) [Vibrio ostreae strain OG9-811]
MGLAIIHSRASIGVQAPEVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSKFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIPDSKLNEHEFIGELALSGEIRSVKGVLPAALAANQARRHLVVPHYNGDQAALVGADRHRSAQTL
LEVCADLCGQQSLSLFQSEATESVPQASRDLQDIIGQHQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPQMSD
AEAMETASVASLTQQEINQHNWKLRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARANPQMILRYLSRLSGPLLDRFDMSIEIPALPKGTLAHGGDR
GEATAMVKQRVQQAREVMLARSGKVNALLQSREIEQFCPLNQADAEFLENALHQLGLSIRAYHRIIKVARTIADLQGEAH
IQRVHLAEALGYRAMDRLLKQLTAQSV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=576830 KNV97_RS18550 WP_218562555.1 2702725..2704248(-) (comM) [Vibrio ostreae strain OG9-811]
ATGGGACTTGCGATTATTCACAGCCGGGCCAGTATCGGCGTTCAGGCTCCGGAGGTGACTGTGGAAGTGCACATCAGTAA
CGGTATGCCGGGTTTTACTCTGGTCGGACTGCCAGAGACCACTGTTAAAGAGTCGCGCGACCGGGTACGCAGTGCGATCA
TCAATTCCAAATTTGAATTTCCGGCCAAGCGGATTACCGTCAATCTGGCCCCGGCGGACCTGCCTAAAGAGGGCGGCCGT
TTTGACCTGCCGATTGCGCTCGGTATTCTCGCGGCCTCAGAGCAGATCCCGGACAGTAAGCTGAATGAACATGAATTTAT
CGGTGAACTGGCGCTATCGGGAGAAATCCGCAGCGTAAAAGGTGTCCTGCCGGCGGCGCTCGCGGCTAATCAGGCCCGGC
GTCATTTGGTGGTGCCGCATTATAATGGCGATCAGGCGGCCTTAGTCGGCGCGGATCGCCATCGCTCGGCGCAGACTCTG
CTGGAGGTGTGCGCGGATTTGTGCGGTCAGCAGAGCTTGTCACTGTTTCAGAGTGAGGCGACCGAGAGTGTCCCGCAAGC
GAGTCGCGACCTGCAGGATATAATTGGTCAGCATCAGGGGAAGCGCGCGCTGGAGATAGCGGCAGCCGGTAATCATAATT
TACTGTTCCTCGGCCCGCCCGGCACTGGCAAAACCATGCTGGCTTCGCGCTTGTGCGATCTGCTGCCGCAGATGAGCGAT
GCTGAAGCAATGGAGACGGCATCGGTGGCGTCGCTGACCCAGCAGGAGATCAATCAGCATAATTGGAAACTGCGGCCGTT
TCGCGCCCCGCATCACTCGAGCTCGATGGCAGCGTTGGTCGGCGGCGGCACGATTCCGCGTCCGGGCGAAATCTCGCTGG
CGCATAACGGCCTGCTGTTTTTAGATGAAATGCCGGAGTTTGAACGTAAAGTGCTCGACTCGCTGCGTGAGCCGCTCGAG
TCGGGCGAAATCATTATTTCCCGCGCGCAGGGTAAGACCCGCTTTCCGGCCCGCTTTCAGCTGGTCGGAGCGCTCAATCC
CAGCCCGACCGGTTATTACGAAGGCAATCAGGCCCGTGCCAATCCGCAGATGATCCTGCGTTATCTGAGTCGTCTGTCCG
GTCCGCTGCTGGACCGCTTTGATATGTCGATTGAAATTCCGGCGCTGCCCAAAGGTACGCTGGCGCATGGTGGCGATCGC
GGTGAAGCGACCGCTATGGTCAAACAGCGCGTGCAGCAGGCGCGTGAAGTGATGCTGGCGCGCAGCGGCAAGGTCAATGC
TTTGCTGCAGAGTCGCGAAATCGAGCAATTTTGTCCGCTTAACCAGGCGGATGCGGAATTTCTCGAAAACGCGCTGCATC
AGTTAGGGCTGTCGATCCGGGCTTATCACCGTATCATTAAAGTGGCGCGCACCATTGCCGATCTGCAGGGAGAAGCGCAC
ATTCAGCGCGTGCATTTGGCGGAAGCGCTCGGTTACCGCGCTATGGACCGGTTACTGAAACAACTCACTGCGCAATCGGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

89.546

100

0.895
  comM Vibrio campbellii strain DS40M4

84.813

100

0.848
  comM Haemophilus influenzae Rd KW20

66.667

100

0.667
  comM Glaesserella parasuis strain SC1401

64.706

100

0.651
  comM Legionella pneumophila str. Paris

50

97.83

0.489
  comM Legionella pneumophila strain ERS1305867

50

97.83

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.195

100

0.432