Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KNV97_RS17035 Genome accession   NZ_CP076643
Coordinates   2380167..2380712 (-) Length   181 a.a.
NCBI ID   WP_136487620.1    Uniprot ID   -
Organism   Vibrio ostreae strain OG9-811     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2375167..2385712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNV97_RS17015 (KNV97_17015) - 2375323..2375673 (-) 351 WP_407701891.1 MSHA biogenesis protein MshK -
  KNV97_RS17020 (KNV97_17020) pilO 2375666..2376322 (-) 657 WP_136487618.1 type 4a pilus biogenesis protein PilO -
  KNV97_RS17025 (KNV97_17025) - 2376322..2377767 (-) 1446 WP_168797062.1 PilN domain-containing protein -
  KNV97_RS17030 (KNV97_17030) csrD 2377776..2379782 (-) 2007 WP_218562421.1 RNase E specificity factor CsrD -
  KNV97_RS17035 (KNV97_17035) ssb 2380167..2380712 (-) 546 WP_136487620.1 single-stranded DNA-binding protein Machinery gene
  KNV97_RS17040 (KNV97_17040) qstR 2380997..2381647 (+) 651 WP_136487621.1 LuxR C-terminal-related transcriptional regulator Regulator
  KNV97_RS17045 (KNV97_17045) galU 2381778..2382647 (+) 870 WP_136487622.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  KNV97_RS17050 (KNV97_17050) uvrA 2382783..2385605 (+) 2823 WP_218562422.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20138.29 Da        Isoelectric Point: 5.2358

>NTDB_id=576826 KNV97_RS17035 WP_136487620.1 2380167..2380712(-) (ssb) [Vibrio ostreae strain OG9-811]
MASRGVNKVILVGNLGGDPEVRYMPSGGAVANITVATSETWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEIVVQGYNGIMQMLGGRQQGGMPQQGGGMNQSSQQQGGWGQPQQPAMQQRQPQQPQQQQA
PQQSQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=576826 KNV97_RS17035 WP_136487620.1 2380167..2380712(-) (ssb) [Vibrio ostreae strain OG9-811]
ATGGCAAGCCGTGGCGTGAATAAAGTAATTTTGGTTGGTAACCTGGGTGGCGATCCTGAAGTTCGCTACATGCCTAGTGG
TGGTGCGGTAGCAAACATCACAGTTGCTACGTCAGAAACATGGCGTGACAAAGCGACTGGTGAACAGCGCGAGAAAACCG
AATGGCACCGTGTTGCTCTGTTCGGCAAGCTGGCAGAAGTCGCTGGTGAATACCTGCGTAAAGGTTCACAGGTTTATATT
GAAGGCCAACTGCAGACTCGTAAATGGCAGGATCAATCTGGTCAGGATCGTTACACCACTGAAATCGTTGTTCAGGGTTA
TAACGGTATCATGCAGATGCTGGGTGGCCGTCAGCAAGGCGGTATGCCGCAACAAGGTGGTGGCATGAACCAGTCATCAC
AACAGCAGGGTGGTTGGGGTCAGCCTCAGCAACCGGCAATGCAGCAGCGCCAGCCACAACAGCCACAGCAGCAGCAGGCA
CCGCAGCAGTCGCAGCCGCAGTACAATGAGCCACCAATGGATTTTGATGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

86.339

100

0.873
  ssb Glaesserella parasuis strain SC1401

56.452

100

0.58
  ssb Neisseria meningitidis MC58

47.568

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.568

100

0.486