Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   KNV97_RS17040 Genome accession   NZ_CP076643
Coordinates   2380997..2381647 (+) Length   216 a.a.
NCBI ID   WP_136487621.1    Uniprot ID   -
Organism   Vibrio ostreae strain OG9-811     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2375997..2386647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNV97_RS17025 (KNV97_17025) - 2376322..2377767 (-) 1446 WP_168797062.1 PilN domain-containing protein -
  KNV97_RS17030 (KNV97_17030) csrD 2377776..2379782 (-) 2007 WP_218562421.1 RNase E specificity factor CsrD -
  KNV97_RS17035 (KNV97_17035) ssb 2380167..2380712 (-) 546 WP_136487620.1 single-stranded DNA-binding protein Machinery gene
  KNV97_RS17040 (KNV97_17040) qstR 2380997..2381647 (+) 651 WP_136487621.1 LuxR C-terminal-related transcriptional regulator Regulator
  KNV97_RS17045 (KNV97_17045) galU 2381778..2382647 (+) 870 WP_136487622.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  KNV97_RS17050 (KNV97_17050) uvrA 2382783..2385605 (+) 2823 WP_218562422.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25335.02 Da        Isoelectric Point: 9.6000

>NTDB_id=576827 KNV97_RS17040 WP_136487621.1 2380997..2381647(+) (qstR) [Vibrio ostreae strain OG9-811]
MSRTNYTRTIYLLCPDQNQPPAPSLQEALSRLPVDVPSIEPEQLLHEYKTDKHKILLFNYDQHQELRQRLSPLRLTNINL
ETILFNVNRRLRTEDLLSFGHLKGLFYRQDTPELIADNLAEIINGYNRLPRHVSSQLLHHFRHVCQHHNTQASLNLTTRE
LEILRCLQTGKSNLRMAESLFISEFTVKSHLYQIFKKIAVKNRTQAVAWANQNLFS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=576827 KNV97_RS17040 WP_136487621.1 2380997..2381647(+) (qstR) [Vibrio ostreae strain OG9-811]
ATGTCACGCACCAATTACACCCGCACGATTTACCTGCTGTGTCCGGATCAAAACCAGCCACCCGCCCCCTCGCTGCAAGA
GGCATTATCGCGTCTGCCAGTCGACGTACCCAGCATCGAACCCGAACAACTCCTGCACGAATACAAAACCGACAAACATA
AAATCCTGTTATTTAATTATGACCAACACCAGGAACTTCGCCAGCGCCTGAGCCCGTTACGGCTGACCAATATCAACCTG
GAAACCATACTGTTTAATGTCAACCGCCGGCTGCGCACCGAGGATTTGCTCTCATTCGGTCATCTTAAGGGGCTGTTTTA
TCGGCAAGACACGCCTGAACTGATTGCCGACAATCTGGCGGAAATCATCAATGGCTATAATCGCCTGCCGCGCCATGTCA
GTAGTCAGCTGCTGCATCATTTCCGTCACGTCTGTCAGCATCACAACACCCAGGCCAGCCTCAACCTGACCACGCGCGAG
CTGGAAATACTGCGCTGCCTGCAGACCGGCAAGTCCAACCTCAGAATGGCGGAAAGTCTGTTCATCAGTGAATTTACGGT
CAAATCGCATCTCTATCAGATCTTTAAAAAGATTGCGGTCAAAAACCGTACTCAGGCGGTCGCCTGGGCTAACCAAAATC
TGTTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

62.212

100

0.625
  qstR Vibrio campbellii strain DS40M4

48.848

100

0.491
  qstR Vibrio parahaemolyticus RIMD 2210633

47.465

100

0.477