Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   KMZ14_RS01490 Genome accession   NZ_CP076603
Coordinates   311445..312164 (+) Length   239 a.a.
NCBI ID   WP_026056744.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain MCDA01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 306445..317164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ14_RS01475 (KMZ14_01475) ponA 307054..309582 (-) 2529 WP_273798392.1 penicillin-binding protein PBP1a -
  KMZ14_RS01480 (KMZ14_01480) pilM 309752..310810 (+) 1059 WP_004810013.1 pilus assembly protein PilM Machinery gene
  KMZ14_RS01485 (KMZ14_01485) comN 310810..311451 (+) 642 WP_273798393.1 PilN domain-containing protein Machinery gene
  KMZ14_RS01490 (KMZ14_01490) comO 311445..312164 (+) 720 WP_026056744.1 type 4a pilus biogenesis protein PilO Machinery gene
  KMZ14_RS01495 (KMZ14_01495) pilP 312164..312691 (+) 528 WP_004810006.1 pilus assembly protein PilP Machinery gene
  KMZ14_RS01500 (KMZ14_01500) pilQ 312708..314807 (+) 2100 WP_273798394.1 type IV pilus secretin PilQ family protein Machinery gene
  KMZ14_RS01505 (KMZ14_01505) aroK 314844..315380 (+) 537 WP_004896271.1 shikimate kinase AroK -
  KMZ14_RS01510 (KMZ14_01510) aroB 315408..316487 (+) 1080 WP_273798395.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26948.52 Da        Isoelectric Point: 4.6463

>NTDB_id=576582 KMZ14_RS01490 WP_026056744.1 311445..312164(+) (comO) [Acinetobacter schindleri strain MCDA01]
MMSEQFDELGQEAVVVPKNKMTVEKFFQQFNTLDPNNYGSWPLAVKITCWVFIVFLVLMLAYFGLIRGKIESITQANAQE
QNLLNEFREKDSKLRNLQQYQQQLQDMEASFNQQLEQLPKETEIPGLVEDINLSGVNAGLKFKNIRLEPEVKQEFFIEQP
ISIEATGDYHAFGSFVSGIAGLSRIVTLHDFTITGTENKEKKTDIPVVDYTLKAKTYRYVGSANSASADTTAANSQGAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=576582 KMZ14_RS01490 WP_026056744.1 311445..312164(+) (comO) [Acinetobacter schindleri strain MCDA01]
ATCATGAGCGAACAATTTGATGAATTAGGTCAGGAAGCTGTTGTTGTACCAAAAAATAAAATGACGGTAGAAAAGTTTTT
TCAGCAATTTAATACCCTCGATCCAAATAACTATGGTAGCTGGCCACTGGCTGTAAAGATTACCTGCTGGGTATTTATTG
TTTTTCTGGTTTTGATGCTGGCTTATTTCGGTCTGATTCGAGGCAAGATTGAATCAATTACTCAGGCCAATGCGCAAGAA
CAGAATCTGTTAAATGAATTCCGTGAGAAAGATTCCAAACTGCGTAATTTGCAACAATACCAACAGCAACTTCAGGATAT
GGAAGCAAGCTTTAACCAACAGCTTGAACAGTTACCAAAGGAAACTGAAATCCCAGGTTTGGTTGAAGATATTAACTTGA
GTGGTGTCAATGCCGGGCTGAAGTTTAAGAATATCCGTCTTGAACCTGAAGTAAAACAAGAGTTCTTTATTGAACAGCCA
ATTTCTATTGAAGCAACGGGTGATTATCATGCCTTTGGTTCATTTGTCAGCGGTATTGCAGGATTGTCTCGTATCGTGAC
GCTACACGACTTTACGATTACGGGTACTGAAAATAAAGAGAAGAAAACCGATATCCCGGTTGTAGATTATACCTTGAAGG
CAAAAACCTATCGTTATGTCGGTAGTGCCAACTCAGCATCGGCAGATACAACAGCTGCGAATAGTCAGGGGGCACAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

69.362

98.326

0.682
  pilO Acinetobacter baumannii D1279779

68.584

94.561

0.649