Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   KMZ14_RS01500 Genome accession   NZ_CP076603
Coordinates   312708..314807 (+) Length   699 a.a.
NCBI ID   WP_273798394.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain MCDA01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307708..319807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ14_RS01480 (KMZ14_01480) pilM 309752..310810 (+) 1059 WP_004810013.1 pilus assembly protein PilM Machinery gene
  KMZ14_RS01485 (KMZ14_01485) comN 310810..311451 (+) 642 WP_273798393.1 PilN domain-containing protein Machinery gene
  KMZ14_RS01490 (KMZ14_01490) comO 311445..312164 (+) 720 WP_026056744.1 type 4a pilus biogenesis protein PilO Machinery gene
  KMZ14_RS01495 (KMZ14_01495) pilP 312164..312691 (+) 528 WP_004810006.1 pilus assembly protein PilP Machinery gene
  KMZ14_RS01500 (KMZ14_01500) pilQ 312708..314807 (+) 2100 WP_273798394.1 type IV pilus secretin PilQ family protein Machinery gene
  KMZ14_RS01505 (KMZ14_01505) aroK 314844..315380 (+) 537 WP_004896271.1 shikimate kinase AroK -
  KMZ14_RS01510 (KMZ14_01510) aroB 315408..316487 (+) 1080 WP_273798395.1 3-dehydroquinate synthase -
  KMZ14_RS01515 (KMZ14_01515) - 316501..317343 (+) 843 WP_262467395.1 hypothetical protein -

Sequence

Protein


Download         Length: 699 a.a.        Molecular weight: 76104.21 Da        Isoelectric Point: 5.2359

>NTDB_id=576584 KMZ14_RS01500 WP_273798394.1 312708..314807(+) (pilQ) [Acinetobacter schindleri strain MCDA01]
MNKSFKEFIFGDANTMNHVFRQFSMGAVAIAVMQAASAQVSMTNVIPMQIPGQGTEIRVMFNGLPPQPQAYQLESPSRLI
LDFDKAQQNLKQSSIAVATKEASSVDVTSDAQRARLTVNLADAGAFTTRVEGNTFILKINSTNPVIPVQPVVQKNTQGIT
NIGFQRGAKGEGQVVIDLASGNTPVDVQQQGTKVIVRALGSKIPAHLTRRLNVNDFATPVSTVDAVNQNGSGVVTIQTSD
SYEYMAYQTDNKLTISLKRPEEKNPLRPKAAQHYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEV
PWDQALDIVLKTKNLDKRRNGNVIWIAPVSELIKAEEEEAKALAQSVKLAPIQTEYMQLSYAKAADIEKLITQNKGASST
GSNSGSTSGDDKESLLSSRGSISIDTRTNTLIINDTQPFIDKIRNMVDLLDVQVKQVMVEARIVTAETNFSRDLGIRWGL
QRNNPSLSAGPNGSNVWGGDYSPKLDLSVDLGTPTAGTFSFGILKISDYMLDLQLTALQSDGMGEVLSAPKILTGDKQKA
YILRGTEIPYQSYSAEGGTTTSFKEANLKLEVTPSITPDGKVQMELTIEKDSIGELTSDGPAINTNELQTNVLVNDGETV
VLGGIFDDFKSNQYQKVPFLGDLPVIGNLFKNNSKVSEQAELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2100 bp        

>NTDB_id=576584 KMZ14_RS01500 WP_273798394.1 312708..314807(+) (pilQ) [Acinetobacter schindleri strain MCDA01]
ATGAATAAAAGTTTTAAAGAATTTATTTTTGGGGATGCTAATACAATGAATCATGTGTTTCGTCAGTTTTCAATGGGGGC
AGTTGCCATTGCTGTTATGCAGGCGGCAAGTGCACAGGTTTCGATGACCAATGTGATACCAATGCAGATTCCAGGACAAG
GTACTGAAATTCGCGTGATGTTTAATGGCTTGCCGCCTCAACCACAAGCTTATCAATTAGAATCACCATCACGTCTGATT
CTGGATTTTGATAAAGCACAGCAGAATTTAAAACAAAGCAGTATTGCTGTTGCAACGAAAGAAGCAAGTTCTGTAGATGT
GACTTCAGATGCCCAGCGTGCACGTTTAACTGTGAATCTGGCTGATGCGGGTGCATTTACCACGCGTGTTGAAGGCAATA
CCTTTATTCTAAAAATCAATTCAACCAATCCAGTTATCCCTGTACAGCCAGTCGTACAAAAAAATACTCAAGGCATTACC
AATATTGGGTTCCAGCGCGGGGCGAAAGGTGAAGGTCAGGTCGTGATCGATCTGGCGAGTGGTAATACACCGGTTGATGT
ACAACAGCAAGGCACTAAAGTTATTGTACGGGCATTAGGCTCCAAGATCCCGGCACATTTAACCCGTCGTCTGAATGTGA
ATGATTTTGCTACACCTGTTTCGACAGTAGATGCGGTCAACCAGAATGGCTCTGGAGTGGTTACCATTCAAACTTCAGAT
AGCTATGAATACATGGCTTATCAAACCGATAATAAACTGACAATTAGTTTAAAGCGCCCAGAAGAGAAAAATCCATTACG
TCCAAAAGCTGCTCAACATTATACTGGTAAGAAAATTTCTTTAGATTTTCAGGATATTGAAGTACGCCGAGTATTACAGC
TGCTAGCAGATTTTACTGATATTAATATGGTTGCAGCAGACAGCGTACAAGGCAATATCACTTTACGTCTTAAGGAAGTG
CCTTGGGATCAGGCTTTAGATATCGTTTTAAAAACCAAGAATTTGGATAAACGTCGTAATGGTAATGTAATCTGGATCGC
GCCTGTATCTGAGCTCATTAAAGCTGAAGAAGAAGAAGCCAAAGCACTTGCACAAAGTGTAAAGCTTGCTCCTATTCAGA
CAGAGTATATGCAACTCAGTTATGCCAAAGCAGCGGATATTGAAAAGCTCATCACGCAAAATAAAGGAGCCTCAAGTACC
GGTTCTAATTCAGGTAGTACAAGTGGAGATGATAAGGAAAGTCTACTGAGTTCTCGTGGCTCAATTTCAATTGATACTCG
TACAAATACATTAATTATTAATGACACACAGCCCTTCATTGATAAAATCCGTAATATGGTCGATCTGCTTGATGTACAGG
TAAAGCAGGTGATGGTTGAAGCACGTATTGTAACGGCAGAGACAAATTTTTCCCGTGATTTGGGCATACGTTGGGGATTG
CAGCGTAATAATCCTAGTTTAAGCGCTGGTCCTAATGGTTCTAATGTCTGGGGTGGCGATTATTCTCCAAAATTAGATTT
AAGTGTAGATTTAGGTACACCTACCGCCGGAACCTTTAGCTTTGGAATATTAAAGATTTCCGATTATATGCTTGATCTAC
AATTAACTGCATTACAGTCCGATGGAATGGGGGAGGTACTCTCGGCTCCTAAAATTCTTACTGGTGATAAGCAAAAAGCT
TATATCTTAAGAGGTACAGAGATTCCTTATCAATCATATAGTGCGGAAGGTGGTACAACAACTTCATTTAAAGAGGCAAA
CCTTAAGTTAGAAGTAACGCCGAGTATTACTCCTGATGGAAAAGTACAGATGGAACTTACAATTGAAAAAGATTCAATTG
GAGAGCTTACCTCTGACGGTCCAGCAATTAATACGAATGAACTGCAAACTAACGTGCTAGTAAATGATGGAGAGACTGTT
GTATTGGGAGGTATTTTTGATGATTTTAAATCAAATCAATACCAAAAAGTGCCTTTTCTTGGAGATCTGCCTGTTATTGG
GAATTTATTCAAGAATAACAGTAAAGTTTCGGAACAAGCCGAGCTCCTGATTTTTGTTACACCTCGAATTGTTAATGACA
GTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(55-135)

Bacterial type II and III secretion system protein (Secretin)

(537-691)

Secretin and TonB N terminus short domain (STN)

(306-348)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

65.603

100

0.677
  pilQ Acinetobacter baumannii strain A118

65.465

100

0.675
  comQ Acinetobacter baylyi ADP1

63.624

100

0.648
  pilQ Pseudomonas aeruginosa PAK

42.795

98.283

0.421
  pilQ Legionella pneumophila strain Lp02

38.752

98.569

0.382
  pilQ Legionella pneumophila strain ERS1305867

38.799

97.711

0.379