Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KMZ14_RS01905 Genome accession   NZ_CP076603
Coordinates   395507..396142 (-) Length   211 a.a.
NCBI ID   WP_004896158.1    Uniprot ID   A0AAE2MSE8
Organism   Acinetobacter schindleri strain MCDA01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 390507..401142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ14_RS01870 (KMZ14_01870) mlaE 390636..391415 (+) 780 WP_004896168.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  KMZ14_RS01875 (KMZ14_01875) - 391415..392092 (+) 678 WP_184103500.1 outer membrane lipid asymmetry maintenance protein MlaD -
  KMZ14_RS01880 (KMZ14_01880) - 392110..392745 (+) 636 WP_184103504.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  KMZ14_RS01885 (KMZ14_01885) - 392758..393048 (+) 291 WP_273798437.1 STAS domain-containing protein -
  KMZ14_RS01890 (KMZ14_01890) - 393315..394328 (-) 1014 WP_004809844.1 CorA family divalent cation transporter -
  KMZ14_RS01895 (KMZ14_01895) - 394482..395072 (+) 591 WP_034434122.1 TIGR00730 family Rossman fold protein -
  KMZ14_RS01900 (KMZ14_01900) - 395104..395505 (+) 402 WP_005223363.1 NUDIX hydrolase -
  KMZ14_RS01905 (KMZ14_01905) comF 395507..396142 (-) 636 WP_004896158.1 ComF family protein Machinery gene
  KMZ14_RS01910 (KMZ14_01910) recG 396129..398174 (-) 2046 WP_004896155.1 ATP-dependent DNA helicase RecG -
  KMZ14_RS01915 (KMZ14_01915) - 398209..399027 (+) 819 WP_004896153.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24191.30 Da        Isoelectric Point: 9.5447

>NTDB_id=576585 KMZ14_RS01905 WP_004896158.1 395507..396142(-) (comF) [Acinetobacter schindleri strain MCDA01]
MPMSKLIQQGKHWLGKLQPCQLCHNDYQTIHSVCQDCWNQLPWAHQTIQRQEMQVQIACHYDYPMDRLIQLFKYEQKLYL
ENLLAGALISLKLPKVSAVVPMPISTDKLVQRGYNQSLLLAKQVAKHLQVPVWQPVSRLKQHSQKGLSRLERIEGIEAQF
QISTSSKLRYRKVLVIDDVVTTGSSIRALNQKLEELGCQQIYTACVAGAKL

Nucleotide


Download         Length: 636 bp        

>NTDB_id=576585 KMZ14_RS01905 WP_004896158.1 395507..396142(-) (comF) [Acinetobacter schindleri strain MCDA01]
ATGCCTATGTCTAAACTGATTCAGCAAGGCAAGCATTGGCTGGGCAAGTTACAACCCTGCCAGCTTTGTCACAACGATTA
TCAAACAATTCATTCAGTATGCCAGGATTGCTGGAACCAGCTACCCTGGGCACATCAGACCATCCAGCGCCAGGAAATGC
AGGTACAGATTGCCTGCCATTATGACTATCCGATGGATCGTCTGATTCAGTTGTTCAAATATGAGCAGAAGCTTTATCTG
GAAAACTTGTTAGCAGGCGCGCTTATCAGTTTAAAACTTCCCAAAGTTAGCGCAGTCGTCCCGATGCCAATCTCAACAGA
CAAATTGGTACAGCGCGGCTATAACCAGTCCTTACTGCTGGCTAAACAGGTCGCAAAGCATCTTCAAGTTCCAGTTTGGC
AACCGGTGAGCCGGCTCAAACAGCATTCACAAAAAGGCTTAAGCCGCCTGGAACGGATTGAAGGTATTGAAGCACAATTT
CAGATCAGTACATCATCAAAATTGCGTTATCGTAAGGTGCTGGTTATTGATGATGTGGTAACAACTGGTAGTTCAATTCG
TGCACTTAATCAGAAGCTCGAAGAACTTGGCTGCCAGCAAATTTATACAGCCTGTGTCGCAGGTGCAAAGCTTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

59.585

91.469

0.545
  comF Acinetobacter baumannii D1279779

59.067

91.469

0.54