Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   KMZ14_RS01485 Genome accession   NZ_CP076603
Coordinates   310810..311451 (+) Length   213 a.a.
NCBI ID   WP_273798393.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain MCDA01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 305810..316451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ14_RS01470 (KMZ14_01470) - 306179..306982 (+) 804 WP_273798391.1 putative RNA methyltransferase -
  KMZ14_RS01475 (KMZ14_01475) ponA 307054..309582 (-) 2529 WP_273798392.1 penicillin-binding protein PBP1a -
  KMZ14_RS01480 (KMZ14_01480) pilM 309752..310810 (+) 1059 WP_004810013.1 pilus assembly protein PilM Machinery gene
  KMZ14_RS01485 (KMZ14_01485) comN 310810..311451 (+) 642 WP_273798393.1 PilN domain-containing protein Machinery gene
  KMZ14_RS01490 (KMZ14_01490) comO 311445..312164 (+) 720 WP_026056744.1 type 4a pilus biogenesis protein PilO Machinery gene
  KMZ14_RS01495 (KMZ14_01495) pilP 312164..312691 (+) 528 WP_004810006.1 pilus assembly protein PilP Machinery gene
  KMZ14_RS01500 (KMZ14_01500) pilQ 312708..314807 (+) 2100 WP_273798394.1 type IV pilus secretin PilQ family protein Machinery gene
  KMZ14_RS01505 (KMZ14_01505) aroK 314844..315380 (+) 537 WP_004896271.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23808.03 Da        Isoelectric Point: 4.7690

>NTDB_id=576581 KMZ14_RS01485 WP_273798393.1 310810..311451(+) (comN) [Acinetobacter schindleri strain MCDA01]
MAKINLLPWRDELRIKRNNEFVAYCVGALLLGMTAAGGSWFYYDQKLQDQEQANQLIISTNQNLDVQLKSLEGLQEQRDA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPSDMYITRFVRSGDKFTIEGKAASPNTVAELLRNLEASTWYRNAFMNAFLV
AEENKDKAPSSVIPRVEESYGTFTVTVDLDQIAQPVLSEQQPQAAAATGGATS

Nucleotide


Download         Length: 642 bp        

>NTDB_id=576581 KMZ14_RS01485 WP_273798393.1 310810..311451(+) (comN) [Acinetobacter schindleri strain MCDA01]
ATGGCAAAAATTAACTTACTTCCTTGGCGTGATGAGCTCAGGATAAAAAGAAATAACGAATTTGTCGCATATTGCGTAGG
GGCATTATTGCTAGGGATGACAGCAGCAGGGGGAAGCTGGTTCTACTATGATCAAAAGTTACAGGATCAAGAACAAGCCA
ACCAACTCATCATCAGTACCAATCAGAATCTGGATGTACAGCTAAAATCTCTGGAAGGTTTACAGGAACAGCGTGATGCA
ATTGTGGAACGCATGAAACTGATTCAAGGTCTGCAGACCCAGCGTCCAATTGCCGTGCATCTTATTGACGAGATTGTGCG
TGTAACCCCAAGTGATATGTATATCACCAGATTTGTTCGTAGTGGTGATAAGTTCACTATTGAAGGGAAAGCAGCAAGTC
CAAATACGGTTGCAGAATTATTGCGTAATCTCGAAGCTTCTACCTGGTACCGTAATGCTTTCATGAATGCATTCCTGGTG
GCGGAAGAAAACAAGGACAAGGCGCCAAGCTCTGTTATTCCACGTGTTGAAGAATCTTATGGCACATTTACAGTGACAGT
GGATCTGGACCAGATTGCTCAACCGGTGCTTTCAGAACAACAGCCGCAAGCGGCTGCAGCAACAGGAGGGGCAACATCAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

67.464

98.122

0.662
  pilN Acinetobacter baumannii D1279779

66.509

99.531

0.662