Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KMZ14_RS01030 Genome accession   NZ_CP076603
Coordinates   215552..217039 (-) Length   495 a.a.
NCBI ID   WP_273798357.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain MCDA01     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 210552..222039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ14_RS01000 (KMZ14_01000) - 210594..210992 (+) 399 WP_004810187.1 MAPEG family protein -
  KMZ14_RS01005 (KMZ14_01005) ppa 211113..211649 (+) 537 WP_273798353.1 inorganic diphosphatase -
  KMZ14_RS01010 (KMZ14_01010) - 211748..213067 (-) 1320 WP_273798354.1 OprD family outer membrane porin -
  KMZ14_RS01015 (KMZ14_01015) - 213574..213891 (+) 318 WP_273798355.1 TorF family putative porin -
  KMZ14_RS01020 (KMZ14_01020) - 214036..214242 (+) 207 WP_273798356.1 hypothetical protein -
  KMZ14_RS01025 (KMZ14_01025) - 214711..215493 (+) 783 WP_071851120.1 TorF family putative porin -
  KMZ14_RS01030 (KMZ14_01030) comM 215552..217039 (-) 1488 WP_273798357.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KMZ14_RS01035 (KMZ14_01035) - 217104..217331 (-) 228 WP_004810171.1 accessory factor UbiK family protein -
  KMZ14_RS01040 (KMZ14_01040) glnK 217608..217946 (+) 339 WP_004281042.1 P-II family nitrogen regulator -
  KMZ14_RS01045 (KMZ14_01045) - 218006..219415 (+) 1410 WP_004810169.1 ammonium transporter -
  KMZ14_RS01050 (KMZ14_01050) nrdR 219555..220022 (+) 468 WP_004810168.1 transcriptional regulator NrdR -
  KMZ14_RS01055 (KMZ14_01055) ribD 220025..221113 (+) 1089 WP_273798358.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54529.67 Da        Isoelectric Point: 7.5578

>NTDB_id=576573 KMZ14_RS01030 WP_273798357.1 215552..217039(-) (comM) [Acinetobacter schindleri strain MCDA01]
MSFAKIHTRGLLGLHAPLIEVEVHVSQGMPSLTIVGLPEAAVRESKDRVRSAILNSGYQFPTKRLTINLAPADLPKDGSR
LDLPIALGILMASGQLPENCTDGMEFIGELALDGQLRPITGTLSIAIACQQSQHELILPKENAQEACQLPDFRVFAAAHL
KEVCDHLNRLAPLVQMQARPQVNHSDSRFDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLASILPPLNT
EENLEVASIYSIANNSHVFGQRPFRAPHHTASAVALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLVAAMNPCPCGYAFNQDIRCQCSPEMIKRYQNRISGPLLDRIDLHIDVPPLQAHELQSTQPVE
DSATVRERVITAYELQIQRQKKLNMALNPKELEQFAPLNAQTSKMFELAQQKLNLSARAYHRVLRVARSIADLAENSEIQ
PQHLSEALSYRGQQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=576573 KMZ14_RS01030 WP_273798357.1 215552..217039(-) (comM) [Acinetobacter schindleri strain MCDA01]
ATGTCTTTTGCTAAAATCCATACTCGGGGATTGCTGGGACTGCATGCCCCTTTAATAGAAGTTGAAGTTCATGTCAGTCA
GGGCATGCCCTCCTTAACTATTGTTGGACTGCCCGAAGCGGCGGTTCGGGAAAGTAAGGATCGGGTTCGTTCTGCTATTT
TGAATAGTGGCTACCAGTTCCCGACCAAACGCTTAACTATTAACCTGGCTCCTGCTGACCTGCCCAAAGACGGTTCACGT
TTAGATCTGCCAATTGCTTTAGGGATTCTGATGGCATCGGGGCAATTACCTGAAAACTGTACTGATGGAATGGAATTCAT
CGGTGAACTTGCTTTAGATGGTCAACTCCGTCCCATCACTGGTACGCTTAGTATTGCGATTGCCTGTCAACAATCGCAGC
ATGAACTGATTCTACCTAAAGAAAATGCTCAGGAAGCCTGTCAGTTACCTGATTTCCGGGTATTTGCCGCTGCTCATCTA
AAAGAAGTTTGTGATCATTTAAATAGACTCGCACCTTTAGTCCAGATGCAGGCCCGACCACAGGTGAATCACTCAGATTC
TCGCTTTGATTTAGCCGATGTCAAAGGCCAGCTGCGCCCAAGACGGGCTTTGGAAATTGCTGCTGCAGGTGGACATTCTT
TATTATTTAGAGGACCTCCTGGAACCGGTAAAACTTTACTGGCTTCTCGGCTAGCCAGTATCTTGCCGCCTCTCAATACT
GAAGAAAATCTTGAAGTCGCCAGTATTTATTCTATTGCCAATAATAGTCATGTTTTTGGACAGCGCCCTTTCCGCGCGCC
ACATCATACCGCGTCTGCAGTTGCCCTGGTCGGTGGAGGATCGCATCCTAAACCAGGTGAAATTACGCTGGCACATTTAG
GAGTGTTATTTCTCGACGAACTGCCGGAATTTGACAGGAAAGTCCTTGAAGTATTACGTCAACCTTTGGAATCTAAGGAA
ATTGTAATTTCGCGTGCCTCTCGACAAATTACTTTCCCAGCCAACTTTCAGCTGGTTGCAGCGATGAATCCCTGCCCTTG
TGGTTATGCTTTTAATCAGGATATTCGCTGCCAGTGTTCTCCAGAAATGATCAAGCGTTATCAGAACCGGATTTCTGGGC
CATTACTGGATCGGATTGACCTGCATATCGATGTGCCTCCTCTGCAAGCTCATGAATTACAATCTACACAACCGGTAGAA
GATTCTGCAACTGTTAGGGAACGTGTGATAACTGCCTACGAACTGCAAATACAAAGACAGAAAAAGCTGAATATGGCATT
AAACCCAAAAGAATTAGAGCAATTTGCGCCACTAAATGCTCAGACCAGTAAAATGTTTGAACTTGCCCAGCAGAAGCTAA
ATCTGTCAGCCCGTGCTTATCACCGGGTATTACGAGTAGCACGAAGCATAGCTGATTTAGCTGAGAATTCAGAAATTCAG
CCTCAGCATTTATCGGAAGCTTTATCTTATCGAGGTCAGCAAAGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.705

100

0.531
  comM Vibrio cholerae strain A1552

51.919

100

0.519
  comM Glaesserella parasuis strain SC1401

51.2

100

0.517
  comM Vibrio campbellii strain DS40M4

50.909

100

0.509
  comM Legionella pneumophila str. Paris

49.194

100

0.493
  comM Legionella pneumophila strain ERS1305867

49.194

100

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.012

100

0.477