Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   KPF78_RS01525 Genome accession   NZ_CP076503
Coordinates   310417..311979 (+) Length   520 a.a.
NCBI ID   WP_002779312.1    Uniprot ID   A0A1B3X8A3
Organism   Campylobacter coli strain R19.0895     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 305417..316979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF78_RS01505 (KPF78_01505) ctsR 307535..307846 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  KPF78_RS01510 (KPF78_01510) ctsD 307824..309242 (+) 1419 WP_002833219.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  KPF78_RS01515 (KPF78_01515) ctsP 309235..309831 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  KPF78_RS01520 (KPF78_01520) - 309828..310424 (+) 597 WP_002779313.1 CDC27 family protein -
  KPF78_RS01525 (KPF78_01525) ctsE 310417..311979 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  KPF78_RS01530 (KPF78_01530) ctsF 311966..313141 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  KPF78_RS01535 (KPF78_01535) - 313138..313518 (-) 381 Protein_296 TSUP family transporter -
  KPF78_RS01540 (KPF78_01540) - 314030..314659 (+) 630 WP_139848212.1 S24 family peptidase -
  KPF78_RS01545 (KPF78_01545) - 314740..315060 (+) 321 WP_002784647.1 hypothetical protein -
  KPF78_RS01550 (KPF78_01550) - 315070..315264 (+) 195 WP_002784648.1 hypothetical protein -
  KPF78_RS01555 (KPF78_01555) - 315344..315631 (+) 288 WP_002784651.1 hypothetical protein -
  KPF78_RS01560 (KPF78_01560) - 315659..316474 (-) 816 WP_002794206.1 DNA adenine methylase -

Sequence

Protein


Download         Length: 520 a.a.        Molecular weight: 59828.44 Da        Isoelectric Point: 5.6204

>NTDB_id=575816 KPF78_RS01525 WP_002779312.1 310417..311979(+) (ctsE) [Campylobacter coli strain R19.0895]
MIERFLFEDYINGKITLEQIDREHKIDSEIFLKALASDKNISYSTLEELDLSLGEKFPCSFLFKFKILPILSKENTLHIA
SSKPCSLELLDEIRIFYEVKNIEVLIASEFKIMKFLYKLQVREKLKNLSTNLRLEWKENRSQDEQSCISQIFDFILDEIL
EFNPSDIHIEARENDTLIRFRVDGILREFACLEKDIYEALVFHIKFLSQLNVAESRKAQDGNFELKIKENRYDFRISSLP
LQNGESIVIRILKHNEEILDLENLNLGEKNLTILKKALYNPYGMILLTGPTGSGKSTSLYACLNELKSIEKKIISVEDPI
EYKMPLIQQILLNPKAGLEFNNALRAILRQDPDIIMVGEIRDEESLDIAIKASLTGHLLLSTLHTNNAISTIDRLIDMSA
KPYLIASALRLVIAQRLVRKLCPKCKQKSTKVYEIKGDFFEAKGCEYCHHSGYQGRELISECLYIDEEIAQVIREGGYKN
KILELAKVKGFQSMFEQGLQKAKEGITSIDELLRVLNEAL

Nucleotide


Download         Length: 1563 bp        

>NTDB_id=575816 KPF78_RS01525 WP_002779312.1 310417..311979(+) (ctsE) [Campylobacter coli strain R19.0895]
ATGATTGAGCGATTTTTATTTGAAGATTATATTAATGGTAAAATCACCCTTGAGCAAATTGATCGTGAGCATAAAATCGA
TAGTGAAATTTTTCTAAAAGCTTTGGCTAGTGATAAAAATATTTCTTATTCTACTTTAGAGGAACTTGATCTTAGTTTGG
GTGAAAAATTTCCATGTAGTTTTCTTTTTAAATTTAAAATCTTGCCCATTTTAAGTAAAGAAAATACACTTCATATAGCA
AGCTCCAAACCTTGTTCTTTAGAGCTTTTAGATGAGATTAGAATTTTTTATGAAGTTAAGAATATAGAAGTTTTGATCGC
AAGCGAATTTAAGATTATGAAATTTTTATATAAACTTCAAGTTAGAGAAAAACTTAAAAATTTAAGCACCAATCTTAGAT
TAGAATGGAAAGAAAATAGAAGTCAAGATGAGCAAAGTTGTATCAGTCAAATTTTTGATTTTATACTCGATGAAATTCTT
GAATTTAATCCTAGCGATATACATATAGAAGCAAGAGAAAATGATACTTTGATAAGATTTAGAGTAGATGGAATTTTACG
CGAATTTGCTTGTCTTGAAAAAGATATTTATGAGGCTTTGGTTTTTCATATTAAATTTTTATCGCAGCTTAATGTTGCAG
AATCAAGAAAGGCTCAAGATGGAAATTTTGAGCTTAAAATCAAAGAAAATAGATATGATTTTAGGATTTCATCTTTGCCT
TTGCAAAATGGCGAAAGCATTGTGATAAGAATTTTAAAACACAACGAAGAAATTTTGGATTTAGAAAATTTAAATTTGGG
CGAAAAAAATCTTACAATTCTAAAAAAAGCCCTATACAACCCTTATGGAATGATTTTACTAACAGGTCCTACAGGAAGTG
GAAAAAGTACAAGTTTATATGCTTGTTTAAATGAGCTAAAAAGCATAGAAAAGAAAATAATTTCTGTGGAAGATCCTATA
GAATATAAAATGCCTTTAATTCAGCAAATTTTGCTAAATCCAAAAGCAGGACTTGAATTTAATAATGCCCTAAGAGCCAT
TTTAAGACAAGATCCTGATATTATCATGGTAGGAGAAATCAGAGATGAGGAGAGCCTTGATATAGCGATTAAGGCTTCCT
TAACGGGGCACTTGCTTTTAAGTACTTTGCATACAAATAATGCCATTTCTACCATAGATAGATTAATTGACATGAGTGCA
AAGCCTTATTTGATCGCTTCTGCTTTAAGGCTTGTCATTGCCCAGCGTTTAGTGCGCAAGCTTTGTCCTAAATGCAAGCA
AAAAAGCACTAAGGTTTATGAAATAAAAGGTGATTTTTTTGAAGCTAAAGGCTGCGAGTATTGTCATCATAGTGGATATC
AAGGTAGAGAACTCATCAGTGAGTGTTTATATATCGATGAGGAAATAGCTCAAGTTATTAGAGAGGGTGGTTATAAAAAT
AAAATTCTAGAGCTTGCTAAAGTAAAGGGTTTTCAAAGTATGTTTGAGCAAGGTTTGCAAAAAGCAAAAGAGGGTATAAC
TAGCATAGATGAGCTTTTAAGGGTACTTAATGAAGCTTTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(46-123)

Type II/IV secretion system protein (T2SSE)

(155-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B3X8A3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

67.188

98.462

0.662
  pilB Acinetobacter baylyi ADP1

35.536

100

0.383
  pilB Legionella pneumophila strain ERS1305867

40.412

93.269

0.377