Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   KPF78_RS01515 Genome accession   NZ_CP076503
Coordinates   309235..309831 (+) Length   198 a.a.
NCBI ID   WP_002779314.1    Uniprot ID   A0A0Q2JMT7
Organism   Campylobacter coli strain R19.0895     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 304235..314831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF78_RS01505 (KPF78_01505) ctsR 307535..307846 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  KPF78_RS01510 (KPF78_01510) ctsD 307824..309242 (+) 1419 WP_002833219.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  KPF78_RS01515 (KPF78_01515) ctsP 309235..309831 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  KPF78_RS01520 (KPF78_01520) - 309828..310424 (+) 597 WP_002779313.1 CDC27 family protein -
  KPF78_RS01525 (KPF78_01525) ctsE 310417..311979 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  KPF78_RS01530 (KPF78_01530) ctsF 311966..313141 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  KPF78_RS01535 (KPF78_01535) - 313138..313518 (-) 381 Protein_296 TSUP family transporter -
  KPF78_RS01540 (KPF78_01540) - 314030..314659 (+) 630 WP_139848212.1 S24 family peptidase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23633.42 Da        Isoelectric Point: 9.1569

>NTDB_id=575815 KPF78_RS01515 WP_002779314.1 309235..309831(+) (ctsP) [Campylobacter coli strain R19.0895]
MNNIIAFRQECFDQINALLKNKALILLWGKSGSGKSVLLQRLALYHNEDFTNEIFTDEKDFHHFIQDKKRKIIILDEVGM
YSPNVLELIRIYSDEMSFVLSSHKKINLFEEEYFKSRFSAIFWLQKPDINELSNYIKMKFNQDFPQKSLKFLMKIYQGNL
RYLDKILQSFCELNTYLNNKKSQDYILRLSALEQGFLK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=575815 KPF78_RS01515 WP_002779314.1 309235..309831(+) (ctsP) [Campylobacter coli strain R19.0895]
ATGAATAATATAATTGCTTTTAGACAAGAATGTTTTGATCAAATCAATGCTTTATTAAAAAATAAAGCTTTGATTTTACT
TTGGGGTAAAAGCGGTAGTGGGAAAAGTGTTTTATTGCAAAGACTTGCGCTATATCATAATGAAGATTTTACCAATGAAA
TTTTTACAGATGAAAAAGATTTTCATCATTTTATACAAGATAAAAAACGAAAAATTATCATACTAGATGAAGTGGGGATG
TATAGTCCTAATGTATTAGAACTAATTCGGATTTATAGCGATGAAATGAGTTTTGTGCTTAGCTCGCATAAAAAAATCAA
TCTTTTTGAAGAGGAGTATTTTAAAAGTCGTTTTAGTGCTATTTTTTGGCTTCAAAAACCTGATATAAATGAATTAAGCA
ATTATATCAAAATGAAATTTAATCAAGACTTTCCCCAAAAATCTTTAAAATTTCTTATGAAAATTTATCAAGGAAATTTA
AGGTATTTAGACAAGATACTTCAAAGTTTTTGCGAATTAAACACCTATTTAAACAATAAAAAAAGTCAAGATTATATTTT
AAGACTAAGCGCATTAGAACAGGGATTTTTAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2JMT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

57.921

100

0.591