Detailed information NTG0575814

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: KPF78_RS01510
• Genome accession: NZ_CP076503
• Coordinates: 307824..309242 (+)
• Length: 472 a.a.
• NCBI ID: WP_002833219.1
• Uniprot ID: -
• Organism: Campylobacter coli strain R19.0895
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 302824..314242

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KPF78_RS01495 (KPF78_01495)	-	303209..303847 (+)	639	WP_002779318.1	HAD family hydrolase	-
KPF78_RS01500 (KPF78_01500)	nifJ	303951..307511 (+)	3561	WP_002779317.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
KPF78_RS01505 (KPF78_01505)	ctsR	307535..307846 (+)	312	WP_002779316.1	hypothetical protein	Machinery gene
KPF78_RS01510 (KPF78_01510)	ctsD	307824..309242 (+)	1419	WP_002833219.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
KPF78_RS01515 (KPF78_01515)	ctsP	309235..309831 (+)	597	WP_002779314.1	ATP-binding protein	Machinery gene
KPF78_RS01520 (KPF78_01520)	-	309828..310424 (+)	597	WP_002779313.1	CDC27 family protein	-
KPF78_RS01525 (KPF78_01525)	ctsE	310417..311979 (+)	1563	WP_002779312.1	GspE/PulE family protein	Machinery gene
KPF78_RS01530 (KPF78_01530)	ctsF	311966..313141 (+)	1176	WP_002781160.1	type II secretion system F family protein	Machinery gene
KPF78_RS01535 (KPF78_01535)	-	313138..313518 (-)	381	Protein_296	TSUP family transporter	-

Sequence

Protein

• Length: 472 a.a.
• Molecular weight: 53455.02 Da
• Isoelectric Point: 6.7666

>NTDB_id=575814 KPF78_RS01510 WP_002833219.1 307824..309242(+) (ctsD) [Campylobacter coli strain R19.0895]
MIRLIFIKILFFTNLIYAMECQKRLFDININEDLSIEESLKELASYCSFSVVIKDTIAKEKLKAIQSSINIHQMSLDEIF
KLFIEEQDLAYKFDGKILKISALQTRIFKINYITSVREGQSITKASVDSKPRQSEYYSAFEDNEDNMIKSMEKFDFWQNI
EKEIMILLSSSHENYDIKAPIVNPNAGLVIVTGTHSQLQRVKAYLQKLESRLKKQVIIDVSILAVNLNKNHSSGINWQNF
NIGLNSQTSDNTNSFMQIQNGQGFVKNLGLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKES
SKGTENGTTVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVEN
NQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNITEIVFIITPSIVGNTHIPSLRELGFKYNE

Nucleotide

• Length: 1419 bp

>NTDB_id=575814 KPF78_RS01510 WP_002833219.1 307824..309242(+) (ctsD) [Campylobacter coli strain R19.0895]
ATGATAAGATTAATATTTATTAAGATTCTATTTTTTACCAATCTTATTTATGCCATGGAATGCCAAAAACGCTTATTTGA
TATAAATATCAATGAAGATCTAAGCATAGAAGAAAGCCTAAAAGAACTTGCTAGTTATTGCTCTTTTAGCGTGGTAATTA
AAGATACAATTGCTAAGGAAAAACTAAAAGCCATTCAAAGCAGTATCAATATCCACCAAATGAGTTTAGATGAAATTTTT
AAACTTTTTATAGAAGAACAGGATCTAGCTTATAAATTTGATGGCAAGATTTTAAAAATTTCTGCTTTGCAAACTAGAAT
TTTTAAAATCAACTATATTACTTCAGTTAGAGAAGGACAAAGCATAACCAAGGCTTCGGTGGATTCTAAGCCAAGGCAAA
GTGAGTATTATAGCGCTTTTGAAGATAATGAAGATAATATGATTAAAAGTATGGAAAAATTTGACTTTTGGCAAAATATA
GAAAAAGAGATTATGATTTTGCTTAGCTCCTCACATGAAAACTATGATATAAAAGCACCTATAGTCAATCCAAATGCTGG
GCTTGTTATCGTTACTGGAACGCATTCTCAGCTTCAACGCGTAAAAGCTTATTTACAAAAGCTTGAAAGTCGTCTTAAAA
AACAAGTTATTATAGATGTGAGTATACTTGCTGTAAATCTTAATAAAAATCATTCTAGTGGGATCAATTGGCAAAATTTC
AATATAGGATTAAATTCTCAAACGAGCGATAATACAAATTCTTTTATGCAAATACAAAATGGTCAAGGTTTTGTTAAAAA
TTTGGGTTTAAGAGCGAATTTGAATTTTGATTCCATTGTCAATTTTTTATCTCAAAGTGGAAAAACCAGTGTTTTATCTA
ATCCTAAATTAATGGCTTTAAACAATCAACAAGCCATTATTTCCATAGGCGATACTGTGAATTATCAAGTAAAAGAAAGC
TCTAAAGGTACTGAAAATGGCACAACTGTAAGTGAGAGTTATAGTAATTATTCTATTTTCATAGGAATTTTGCTTAATAT
TTTGCCCGAAATTTCTGATGATGGAAAAATCATGCTTAGGATCAATCCAAGTCTAAGCGACTTTAAATACCCAGAGGACA
ATAAAAGACAAAAAGAACCCCGCACTATCGCGCCTGATACAATTCAAAAAAAGCTTTCAAGTGTGGTGCAAGTAGAAAAT
AATCAAACTTTAATTTTGGGCGGACTTATCTCTCATAATCGCTCACAAAATGATAATTCTGTTAATTTTTTATCTAAAAT
TCCCATTTTGGGTTCTTTATTTAGAAGTGAAGATGAAAATTCCAATATCACAGAAATTGTTTTTATCATCACCCCAAGCA
TAGTAGGCAATACACATATACCTAGTCTTAGGGAGTTAGGATTTAAATACAATGAATAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (283-455)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	80.508	100	0.805