Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   KO461_RS00485 Genome accession   NZ_CP076449
Coordinates   98040..98369 (-) Length   109 a.a.
NCBI ID   WP_005539279.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain CU1000N     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 93040..103369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KO461_RS00460 (KO461_00455) serA 93796..95028 (-) 1233 WP_005539290.1 phosphoglycerate dehydrogenase -
  KO461_RS00465 (KO461_00460) rpiA 95048..95704 (-) 657 WP_005564187.1 ribose-5-phosphate isomerase RpiA -
  KO461_RS00470 (KO461_00465) hemW 95803..96972 (-) 1170 WP_005539285.1 radical SAM family heme chaperone HemW -
  KO461_RS00475 (KO461_00470) - 96972..97295 (-) 324 WP_005561920.1 YbjQ family protein -
  KO461_RS00480 (KO461_00475) - 97334..97927 (-) 594 WP_005564188.1 XTP/dITP diphosphatase -
  KO461_RS00485 (KO461_00480) comE1/comEA 98040..98369 (-) 330 WP_005539279.1 ComEA family DNA-binding protein Machinery gene
  KO461_RS00490 (KO461_00485) ispH 98962..99906 (-) 945 WP_005538061.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KO461_RS00495 (KO461_00490) lspA 99906..100400 (-) 495 WP_005538058.1 signal peptidase II -
  KO461_RS00500 (KO461_00495) ileS 100480..103302 (-) 2823 WP_061888217.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11355.12 Da        Isoelectric Point: 9.6912

>NTDB_id=575413 KO461_RS00485 WP_005539279.1 98040..98369(-) (comE1/comEA) [Aggregatibacter actinomycetemcomitans strain CU1000N]
MKAMKHLLASLFVLGSVFAGSAVAAEKAAEPAVQTEQPAATAAVGEKVNINTASAAEIQKALVGIGVKKAEAVVQYREKH
GNFSAVEQLLEVQGIGKATLDKNRDRIAL

Nucleotide


Download         Length: 330 bp        

>NTDB_id=575413 KO461_RS00485 WP_005539279.1 98040..98369(-) (comE1/comEA) [Aggregatibacter actinomycetemcomitans strain CU1000N]
ATGAAAGCAATGAAACATCTTTTGGCTTCGCTGTTCGTGTTAGGTTCGGTGTTTGCGGGTTCTGCCGTGGCGGCGGAAAA
AGCGGCTGAACCGGCGGTACAAACGGAGCAACCGGCGGCAACGGCAGCGGTCGGTGAGAAAGTGAATATTAACACCGCCA
GTGCTGCGGAAATTCAAAAAGCCCTTGTAGGCATCGGTGTGAAAAAAGCGGAAGCGGTAGTGCAGTATCGTGAAAAACAC
GGTAATTTCAGCGCCGTGGAGCAGTTGCTGGAAGTGCAGGGCATCGGCAAAGCGACCTTAGACAAAAATCGCGACCGTAT
CGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

59.091

100

0.596
  comEA/comE1 Glaesserella parasuis strain SC1401

51.754

100

0.541
  comEA Vibrio parahaemolyticus RIMD 2210633

44.34

97.248

0.431
  comEA Vibrio cholerae C6706

39.623

97.248

0.385
  comEA Vibrio cholerae strain A1552

39.623

97.248

0.385