Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KN217_RS01980 Genome accession   NZ_CP076348
Coordinates   430275..431771 (-) Length   498 a.a.
NCBI ID   WP_213662508.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain DN36     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 425275..436771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KN217_RS01970 (KN217_01960) - 426513..428165 (+) 1653 WP_301619666.1 bifunctional diguanylate cyclase/phosphodiesterase -
  KN217_RS01975 (KN217_01965) - 428185..430158 (-) 1974 WP_301619667.1 choline BCCT transporter BetT -
  KN217_RS01980 (KN217_01970) comM 430275..431771 (-) 1497 WP_213662508.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KN217_RS01985 (KN217_01975) - 431807..432067 (-) 261 WP_008568387.1 accessory factor UbiK family protein -
  KN217_RS01990 (KN217_01980) glnK 432452..432790 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  KN217_RS01995 (KN217_01985) - 432830..434146 (+) 1317 WP_008568370.1 ammonium transporter -
  KN217_RS02000 (KN217_01990) - 434273..434698 (+) 426 WP_301619668.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KN217_RS02005 (KN217_01995) sutA 434773..435108 (+) 336 WP_008568368.1 transcriptional regulator SutA -
  KN217_RS02010 (KN217_02000) - 435173..435871 (-) 699 WP_301619669.1 HAD family hydrolase -
  KN217_RS02015 (KN217_02005) xerC 435868..436767 (-) 900 WP_301619670.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 52708.42 Da        Isoelectric Point: 7.5432

>NTDB_id=574801 KN217_RS01980 WP_213662508.1 430275..431771(-) (comM) [Stutzerimonas stutzeri strain DN36]
MSLAIVHSRAQSGVEAPPVTVEAHLANGLPSLALVGLPETAVKESKDRVRSAILTSGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPAERLDGLECLGELALSGALRPVQGVLPAALAARAAGRALLVPRANAEEASLASGLTVYAAEHL
LEVAAHFSGTTPLTPYVAEGLLRQVLPYPDLADVQGQLAAKRGLLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
QEALEVAAIQSVASHGPLAHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GQIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPGGRCRCTPEQIQRYRGKLSGPLLDRIDLHLTVARETTSLNAPAQH
GQSSAEVAAQVADARQLQLRRQGCANAFLDLAGLRQHCRLDGADQQWLEHACERLGLSLRAAHRLLKVSRTLADLDAAAD
ISRQHLAEALQYRPAAQA

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=574801 KN217_RS01980 WP_213662508.1 430275..431771(-) (comM) [Stutzerimonas stutzeri strain DN36]
ATGTCCCTGGCCATCGTCCACAGCCGCGCACAGAGCGGCGTTGAAGCGCCACCGGTGACCGTCGAGGCGCATCTGGCCAA
CGGCCTGCCCTCGCTGGCGCTGGTCGGCCTACCGGAAACCGCGGTGAAGGAAAGCAAGGATCGCGTGCGCAGCGCCATCC
TCACCTCCGGTTTCGACTTCCCCGCCCGCCGCATCACCCTCAACCTCGCCCCCGCCGATCTGCCCAAGGACGGCGGCCGC
TTCGACCTGGCCATCGCCCTGGGCATTCTCGCGGCCAGCGGTCAGCTACCGGCCGAGCGCCTGGACGGACTCGAATGCCT
GGGCGAGCTGGCGCTTTCCGGGGCGCTGCGGCCGGTGCAGGGCGTGTTGCCCGCCGCGCTTGCCGCTCGCGCCGCCGGCC
GCGCGCTGCTGGTGCCGCGCGCCAATGCCGAAGAAGCCAGCCTGGCGTCCGGCCTGACCGTCTATGCCGCCGAGCACCTG
CTGGAAGTCGCCGCACATTTCAGCGGCACCACGCCGCTGACGCCCTATGTCGCCGAAGGCCTGCTGCGCCAGGTGCTGCC
CTACCCCGACCTGGCCGACGTGCAAGGCCAACTCGCCGCCAAGCGCGGCCTGCTGGTCGCCGCGGCGGGGGCGCACAACC
TGCTGTTCTCCGGCCCACCCGGCACCGGCAAGACGCTGCTGGCCAGCCGCCTGCCCGGTCTGCTGCCGCCACTGGACGAG
CAGGAAGCGCTGGAAGTCGCGGCGATCCAGTCGGTGGCCAGCCACGGTCCGCTGGCGCACTGGCCGCAACGGCCGTTCCG
CCAGCCGCACCACAGCGCGTCCGGTCCGGCGCTGGTCGGTGGCGGCAGCCGGCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTTCTCGACGAGCTACCGGAGTTTGATCGCAAGGTGCTGGAGGTGCTGCGCGAGCCGCTGGAATCG
GGCCAGATCGTGATCGCCCGGGCACGCGACAAGGTGCGCTTCCCGGCGCGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTATCTCGGCGATCCCGGCGGGCGCTGCCGCTGCACCCCGGAGCAGATCCAGCGCTACCGCGGCAAACTCT
CCGGCCCGCTGCTCGACCGTATCGACCTGCACCTGACAGTCGCGCGCGAAACCACCTCGCTGAACGCACCCGCGCAGCAT
GGCCAGAGCAGCGCGGAAGTGGCCGCACAGGTGGCGGACGCGCGTCAGTTGCAGTTGCGCCGTCAGGGCTGCGCCAATGC
CTTTCTCGATCTCGCCGGCCTGCGCCAGCACTGCCGGCTGGACGGCGCCGACCAGCAATGGCTGGAACACGCCTGCGAAC
GCCTCGGCCTGTCGCTACGCGCTGCGCACCGCCTGCTCAAGGTGTCGCGCACGCTGGCCGACCTGGACGCGGCGGCAGAT
ATATCCCGCCAGCACCTCGCCGAAGCGCTGCAGTACCGCCCCGCCGCCCAGGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.566

99.398

0.562
  comM Vibrio campbellii strain DS40M4

55.96

99.398

0.556
  comM Haemophilus influenzae Rd KW20

55

100

0.552
  comM Glaesserella parasuis strain SC1401

54.491

100

0.548
  comM Legionella pneumophila str. Paris

50.395

100

0.512
  comM Legionella pneumophila strain ERS1305867

50.395

100

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.016

100

0.464