Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG76_RS02570 Genome accession   NZ_CP094098
Coordinates   537580..538755 (-) Length   391 a.a.
NCBI ID   WP_245038949.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe081     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 532580..543755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG76_RS02535 (MPG76_02535) - 532897..533211 (+) 315 WP_000868000.1 hypothetical protein -
  MPG76_RS02540 (MPG76_02540) - 533189..533965 (+) 777 WP_000602378.1 RNA polymerase sigma factor FliA -
  MPG76_RS02545 (MPG76_02545) fliM 533958..535022 (+) 1065 WP_001919332.1 flagellar motor switch protein FliM -
  MPG76_RS02550 (MPG76_02550) fliY 535026..535889 (+) 864 WP_245038945.1 flagellar motor switch protein FliY -
  MPG76_RS02555 (MPG76_02555) - 535917..536453 (+) 537 WP_245038947.1 YhcH/YjgK/YiaL family protein -
  MPG76_RS02560 (MPG76_02560) - 536450..536947 (+) 498 WP_000780248.1 DUF2147 domain-containing protein -
  MPG76_RS02565 (MPG76_02565) fur 536967..537419 (-) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG76_RS02570 (MPG76_02570) rarA 537580..538755 (-) 1176 WP_245038949.1 replication-associated recombination protein A Machinery gene
  MPG76_RS02575 (MPG76_02575) - 538752..539123 (-) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG76_RS02580 (MPG76_02580) - 539133..539999 (-) 867 WP_245038951.1 DnaJ C-terminal domain-containing protein -
  MPG76_RS02585 (MPG76_02585) - 540167..541417 (+) 1251 WP_245038953.1 outer membrane family protein -
  MPG76_RS02590 (MPG76_02590) - 541507..542373 (-) 867 WP_245039270.1 5'-3' exonuclease -
  MPG76_RS02595 (MPG76_02595) - 542597..543493 (-) 897 WP_231228622.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43923.57 Da        Isoelectric Point: 8.1219

>NTDB_id=574801 MPG76_RS02570 WP_245038949.1 537580..538755(-) (rarA) [Helicobacter pylori strain Hpfe081]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCTK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=574801 MPG76_RS02570 WP_245038949.1 537580..538755(-) (rarA) [Helicobacter pylori strain Hpfe081]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATTTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAAAGCGATTTAGACAAACTTTGCACTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGTGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAGATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAATCTTACTAGTGCATTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTACTATCTGGCGCGCTTGATTGCTGGTGGGGAAAACCCGGAATTTATCGCCAGAAGGTTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGCTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394