Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KHF85_RS02340 Genome accession   NZ_CP076255
Coordinates   550569..552089 (-) Length   506 a.a.
NCBI ID   WP_284568375.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. graminis strain NCPPB 3711     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 538379..550146 550569..552089 flank 423


Gene organization within MGE regions


Location: 538379..552089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHF85_RS02285 (KHF85_02285) - 538379..539335 (+) 957 WP_284566649.1 IS1595 family transposase -
  KHF85_RS02290 (KHF85_02290) bioH 539363..540124 (-) 762 WP_284568367.1 pimeloyl-ACP methyl ester esterase BioH -
  KHF85_RS02295 (KHF85_02295) bioF 540192..541397 (-) 1206 WP_409976643.1 8-amino-7-oxononanoate synthase -
  KHF85_RS02300 (KHF85_02300) bioB 541516..542571 (-) 1056 WP_064541247.1 biotin synthase BioB -
  KHF85_RS02305 (KHF85_02305) - 542621..543346 (+) 726 WP_284568369.1 ComF family protein -
  KHF85_RS02310 (KHF85_02310) - 543471..544118 (+) 648 WP_284568370.1 SecDF P1 head subdomain-containing protein -
  KHF85_RS02315 (KHF85_02315) ubiA 544586..545488 (-) 903 WP_284568371.1 4-hydroxybenzoate octaprenyltransferase -
  KHF85_RS02325 (KHF85_02325) - 546364..547191 (+) 828 WP_284568372.1 alpha/beta fold hydrolase -
  KHF85_RS02330 (KHF85_02330) - 547811..548995 (+) 1185 WP_284568373.1 carotenoid 1,2-hydratase -
  KHF85_RS02335 (KHF85_02335) - 549043..550146 (+) 1104 WP_284568374.1 lipocalin-like domain-containing protein -
  KHF85_RS02340 (KHF85_02340) comM 550569..552089 (-) 1521 WP_284568375.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53587.31 Da        Isoelectric Point: 8.9068

>NTDB_id=574091 KHF85_RS02340 WP_284568375.1 550569..552089(-) (comM) [Xanthomonas translucens pv. graminis strain NCPPB 3711]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAAILCAQYEFPARRITVNLAPADLPKDGGR
FDLPIALGILAAAGQLDPQALGNYEFLGELALTGELRAVDGVLPAALAAAQAGRTLIVPAGNGPEAALAQHVQAFTARTL
LEVCALLNGTKTLPAAEALPAAVTPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALEAAAIASVSGRGLDPARWRQRPYRSPHHTASAVSLVGGGTHPRPGEISLAHRGVLFLDELPEWNRHALEVLREPLESG
TVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDASGRCRCSDDSIRRYRARISGPLLDRIDLHVDVPRLPPQALRADAAP
GESSAAVRARVELARQRQLARAGRPNGQLGHSETLRDCRLQPRDEALLEHAIDRLRLSARSLHRILRVARTIADLAGSDA
IATAHLTEAIGYRQLDRAEPGLARSA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=574091 KHF85_RS02340 WP_284568375.1 550569..552089(-) (comM) [Xanthomonas translucens pv. graminis strain NCPPB 3711]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTCCGGGTCGAGGTCCATCTGTCCGG
CGGACTGCCGGCCACGCAGATCGTCGGCCTGCCCGAAGCGGCGGTGCGCGAATCGCGCGACCGGGTACGCGCCGCCATCC
TGTGCGCGCAATACGAATTCCCGGCGCGGCGCATCACCGTCAACCTGGCCCCGGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCCGCCGCCGGGCAACTCGACCCGCAGGCGCTGGGCAACTACGAATTCCT
CGGCGAACTGGCCTTGACCGGCGAACTGCGCGCCGTCGACGGGGTGCTGCCGGCGGCGCTGGCCGCCGCGCAAGCCGGAC
GCACGCTGATCGTGCCCGCCGGCAACGGCCCCGAAGCGGCGCTGGCGCAGCACGTGCAGGCGTTCACCGCGCGCACCCTG
CTCGAAGTCTGCGCACTGTTGAACGGCACCAAGACTCTGCCGGCCGCCGAAGCCCTGCCGGCCGCGGTCACGCCGTTTCC
CGACCTGAGCGACGTGCGCGGGCAGGCCCAGGCGCGGCGTGCGCTGGAAATCGCGGCGGCCGGTCATCACCATTTGTTAT
TGATCGGTAGCCCGGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGCATCCTGCCCGAGGCCAGCGAGGCCGAG
GCGCTGGAAGCGGCGGCGATCGCCTCGGTCAGCGGTCGCGGCCTGGACCCGGCGCGCTGGCGGCAACGCCCCTACCGGTC
CCCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGCGGCGGCACCCATCCGCGTCCCGGCGAAATCTCGCTGGCGCATC
GCGGCGTGTTGTTCCTCGACGAGTTGCCCGAGTGGAACCGGCACGCGCTGGAAGTGCTGCGCGAGCCGCTGGAATCGGGC
ACGGTCACCGTCTCGCGGGCCGCGCGCAGCGCCGAATTCCCGGCCCGCTTCCAACTGGTCGCGGCGATGAACCCCTGTCC
CTGCGGCTGGGCCGGCGATGCCAGCGGCCGTTGCCGCTGCAGCGACGACAGCATCCGCCGCTATCGCGCGCGCATCTCCG
GTCCGTTGCTGGACCGCATCGACCTGCATGTGGACGTGCCGCGACTGCCGCCGCAGGCGCTACGCGCCGATGCCGCTCCC
GGCGAAAGCAGCGCCGCCGTGCGCGCCCGGGTGGAGCTGGCGCGGCAACGCCAGCTGGCGCGCGCCGGCCGCCCCAACGG
CCAGCTCGGCCACAGCGAGACCCTGCGCGACTGCCGCCTGCAGCCGCGCGACGAGGCGCTGCTGGAACACGCCATCGACC
GCCTGCGCCTGTCGGCGCGCTCCCTGCACCGCATCCTGCGCGTGGCCCGCACCATCGCCGACCTGGCCGGCAGCGACGCG
ATCGCCACCGCGCACCTGACCGAGGCGATCGGTTACCGGCAACTGGATCGAGCAGAGCCGGGGCTGGCGCGGAGCGCATG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.513

98.617

0.557
  comM Vibrio campbellii strain DS40M4

54.582

99.209

0.542
  comM Haemophilus influenzae Rd KW20

53.968

99.605

0.538
  comM Glaesserella parasuis strain SC1401

53.175

99.605

0.53
  comM Legionella pneumophila str. Paris

50.595

99.605

0.504
  comM Legionella pneumophila strain ERS1305867

50.595

99.605

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.773

100

0.449