Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PCNPT3_RS12100 Genome accession   NC_020802
Coordinates   2746049..2746666 (+) Length   205 a.a.
NCBI ID   WP_015466143.1    Uniprot ID   -
Organism   Psychromonas sp. CNPT3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2741049..2751666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCNPT3_RS12080 (PCNPT3_11620) - 2741381..2741959 (-) 579 WP_015466139.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  PCNPT3_RS12085 (PCNPT3_11625) - 2742199..2743668 (+) 1470 WP_041771309.1 hypothetical protein -
  PCNPT3_RS12090 (PCNPT3_11630) rlmJ 2743699..2744541 (-) 843 WP_015466141.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  PCNPT3_RS12095 (PCNPT3_11635) - 2744664..2746028 (+) 1365 WP_015466142.1 MFS transporter -
  PCNPT3_RS12100 (PCNPT3_11640) ssb 2746049..2746666 (+) 618 WP_015466143.1 single-stranded DNA-binding protein Machinery gene
  PCNPT3_RS12105 (PCNPT3_11645) pdxY 2746772..2747635 (-) 864 WP_015466144.1 pyridoxal kinase PdxY -
  PCNPT3_RS12110 (PCNPT3_11650) yjjG 2748008..2748682 (+) 675 WP_015466145.1 pyrimidine 5'-nucleotidase -
  PCNPT3_RS12115 (PCNPT3_11655) - 2748838..2750190 (-) 1353 WP_015466146.1 sodium-dependent transporter -
  PCNPT3_RS12120 (PCNPT3_11660) - 2750550..2751029 (-) 480 WP_015466147.1 Lrp/AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22898.51 Da        Isoelectric Point: 7.9958

>NTDB_id=57378 PCNPT3_RS12100 WP_015466143.1 2746049..2746666(+) (ssb) [Psychromonas sp. CNPT3]
MFNRSINKVILVGNLGKDPEMRYMPNGNAVANLTLATTESWKDKQSGERKEHTEWHNLTVFGRLGEMCGEYLKKGAKIYV
EGRLKTDKWQDQSGQARYTTKVNVSEIQMMDSRNQQSGQAFQNNAPQQNAQPAQQSWGNAPQQPPMQAQAAPQMAPAYQA
PTQQPQAPKAPQAPQQKAAPQQQAPQQAPAQYNEPAMDFDDDIPF

Nucleotide


Download         Length: 618 bp        

>NTDB_id=57378 PCNPT3_RS12100 WP_015466143.1 2746049..2746666(+) (ssb) [Psychromonas sp. CNPT3]
ATGTTTAACCGTAGCATCAACAAAGTTATTTTAGTGGGTAATCTTGGTAAAGATCCTGAAATGCGTTACATGCCCAACGG
TAATGCAGTCGCAAACTTAACGTTAGCAACGACAGAAAGTTGGAAAGATAAACAAAGCGGTGAGCGCAAAGAGCACACTG
AATGGCATAATTTAACGGTATTTGGCCGTTTAGGTGAAATGTGTGGAGAGTACCTTAAAAAAGGCGCCAAAATTTACGTT
GAAGGACGTTTAAAAACGGACAAATGGCAAGATCAAAGTGGCCAAGCTCGTTATACAACAAAGGTTAACGTTTCTGAAAT
TCAAATGATGGATTCACGTAACCAGCAAAGTGGACAAGCATTCCAAAATAATGCCCCACAACAAAATGCACAACCCGCAC
AACAAAGCTGGGGAAATGCACCACAACAACCACCAATGCAAGCACAAGCAGCACCTCAAATGGCACCTGCTTATCAGGCG
CCTACTCAACAACCACAGGCACCAAAAGCGCCTCAAGCACCACAACAGAAAGCGGCGCCTCAACAACAAGCGCCTCAGCA
AGCACCCGCTCAATACAATGAGCCTGCAATGGATTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.185

100

0.527
  ssb Glaesserella parasuis strain SC1401

47.525

98.537

0.468
  ssb Neisseria gonorrhoeae MS11

41.872

99.024

0.415
  ssb Neisseria meningitidis MC58

41.379

99.024

0.41

Multiple sequence alignment