Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PCNPT3_RS02810 Genome accession   NC_020802
Coordinates   631941..633461 (+) Length   506 a.a.
NCBI ID   WP_015464355.1    Uniprot ID   M4U2L2
Organism   Psychromonas sp. CNPT3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 626941..638461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCNPT3_RS02805 (PCNPT3_02655) - 630176..631675 (+) 1500 WP_015464354.1 amino acid permease -
  PCNPT3_RS02810 (PCNPT3_02660) comM 631941..633461 (+) 1521 WP_015464355.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PCNPT3_RS02815 (PCNPT3_02665) - 633623..634552 (+) 930 WP_015464356.1 LysR family transcriptional regulator -
  PCNPT3_RS02820 (PCNPT3_02670) - 634755..635864 (+) 1110 WP_015464357.1 NAD/NADP-dependent octopine/nopaline dehydrogenase family protein -
  PCNPT3_RS02825 (PCNPT3_02675) - 635883..637286 (+) 1404 WP_015464358.1 YfcC family protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55185.24 Da        Isoelectric Point: 9.1091

>NTDB_id=57366 PCNPT3_RS02810 WP_015464355.1 631941..633461(+) (comM) [Psychromonas sp. CNPT3]
MAIATLYCRSVLGIDAKQVLVEVHLSRGLPTFALVGLPETSVKEAKERVRSAIINSHFMWPHNKRIIVNLAPANLSKEGG
RFDLAIALAILIASEQIPAAPFEHFECIAELALSGELRPVDAIIPCALAANKKNRSLLICLANQNDVALTGNPALIARSL
TQVCAFMLGKIELPCVLEQTHEDKPQKTDISDVLGQQQAKRVLEIAATGQHNLLLIGPPGTGKSMLAERFMTLLPALSKA
QALETATLYSVCGQVRENGYQPPFRAPHHSASLVALVGGGTRPKPGEISLAHNGILFLDELAEFPRAVLDSLRQPLETKN
VSISRVLQQVTFPANFQLIAAMNPSPCGFISGEKRRSTPDQILRYLGRLSGPFLDRFALSIMVPLLPKGILASSQMGQTI
NNESSQQIQTRVASARKRQISRQGKLNNALNVKEVALFCQLTPADALFLEGALDKMGLSIRAWHSLLKVARSIADLGHCE
NITRDHLYEALNYRAMDRLLKSILDN

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=57366 PCNPT3_RS02810 WP_015464355.1 631941..633461(+) (comM) [Psychromonas sp. CNPT3]
ATGGCGATTGCAACGTTGTATTGTAGGAGCGTTTTAGGTATTGATGCAAAACAAGTCCTTGTTGAAGTGCATTTGAGTCG
TGGTTTACCGACGTTTGCCTTGGTGGGTTTACCTGAAACATCGGTGAAAGAGGCCAAAGAACGCGTGCGCAGTGCGATCA
TCAATAGCCATTTTATGTGGCCACATAATAAACGTATTATTGTTAATTTAGCGCCTGCTAATTTATCTAAAGAGGGCGGA
CGTTTCGATCTTGCCATAGCATTAGCTATTTTAATTGCCTCTGAGCAAATTCCAGCAGCCCCCTTTGAGCATTTTGAATG
TATTGCTGAGCTTGCATTGTCAGGAGAGCTTCGCCCTGTCGATGCCATTATTCCTTGCGCGCTTGCTGCCAATAAAAAAA
ATAGAAGTTTATTAATATGTTTAGCGAATCAAAATGACGTTGCTTTAACAGGAAATCCTGCCTTGATTGCTCGAAGTTTA
ACGCAAGTGTGTGCATTTATGCTGGGTAAAATCGAGTTGCCTTGTGTGTTAGAACAAACACATGAAGACAAACCACAAAA
AACAGATATTAGTGATGTGCTAGGTCAGCAACAAGCCAAGCGCGTATTAGAAATCGCCGCCACAGGTCAGCATAATTTAT
TATTAATCGGTCCACCTGGCACCGGTAAAAGTATGCTAGCAGAGCGTTTTATGACGTTACTTCCCGCTTTGTCGAAAGCG
CAGGCTCTCGAAACGGCAACCCTTTACTCTGTGTGCGGACAGGTACGAGAAAATGGTTATCAGCCCCCTTTTAGAGCGCC
ACATCATAGTGCATCGTTAGTTGCGTTAGTAGGAGGGGGCACTCGTCCTAAACCGGGTGAAATATCTTTGGCGCATAACG
GTATTTTATTTTTAGATGAACTTGCCGAGTTTCCTCGCGCCGTGCTTGATAGTTTGCGTCAACCGCTAGAAACTAAAAAC
GTGAGTATTTCCCGTGTTTTACAGCAAGTGACATTTCCGGCTAATTTTCAGTTAATTGCAGCCATGAACCCGAGCCCTTG
TGGGTTTATCAGTGGAGAGAAAAGGCGCAGTACACCGGATCAAATTCTACGTTATTTAGGGCGTTTATCAGGGCCATTTT
TAGATCGATTTGCATTATCAATCATGGTGCCTTTATTACCCAAAGGGATCCTGGCCAGCTCACAAATGGGTCAAACCATA
AACAATGAAAGTAGTCAGCAGATCCAAACACGGGTTGCGAGTGCACGTAAAAGACAAATATCAAGACAAGGAAAATTAAA
TAATGCATTAAATGTAAAAGAGGTGGCTTTATTTTGTCAGCTTACGCCTGCAGATGCTCTATTTTTGGAGGGGGCGTTAG
ATAAAATGGGATTATCTATTCGCGCTTGGCATAGTTTGTTGAAAGTGGCGCGTAGTATTGCTGATTTGGGGCATTGTGAG
AATATTACGCGCGATCATTTATATGAAGCGCTCAATTATCGAGCCATGGATAGATTATTAAAAAGTATTTTAGATAATTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-387)

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M4U2L2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.224

100

0.545
  comM Vibrio cholerae strain A1552

54.043

100

0.541
  comM Haemophilus influenzae Rd KW20

53.229

100

0.538
  comM Glaesserella parasuis strain SC1401

52.941

100

0.534
  comM Legionella pneumophila str. Paris

49.109

99.802

0.49
  comM Legionella pneumophila strain ERS1305867

49.109

99.802

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

40.313

100

0.407

Multiple sequence alignment