Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   D16iCDA_RS13365 Genome accession   NZ_CP076114
Coordinates   2903374..2905518 (+) Length   714 a.a.
NCBI ID   WP_070880246.1    Uniprot ID   A0A1G7LW76
Organism   Phytopseudomonas seleniipraecipitans strain D1-6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2898374..2910518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D16iCDA_RS13345 (D16iCDA_13350) pilM 2900548..2901612 (+) 1065 WP_070880250.1 pilus assembly protein PilM Machinery gene
  D16iCDA_RS13350 (D16iCDA_13355) - 2901612..2902184 (+) 573 WP_070880249.1 PilN domain-containing protein -
  D16iCDA_RS13355 (D16iCDA_13360) pilO 2902181..2902804 (+) 624 WP_070880248.1 type 4a pilus biogenesis protein PilO -
  D16iCDA_RS13360 (D16iCDA_13365) pilP 2902801..2903319 (+) 519 WP_070880247.1 type 4a pilus biogenesis lipoprotein PilP -
  D16iCDA_RS13365 (D16iCDA_13370) pilQ 2903374..2905518 (+) 2145 WP_070880246.1 type IV pilus secretin PilQ Machinery gene
  D16iCDA_RS13370 (D16iCDA_13375) aroK 2905522..2906040 (+) 519 WP_070880245.1 shikimate kinase AroK -
  D16iCDA_RS13375 (D16iCDA_13380) aroB 2906092..2907198 (+) 1107 WP_070880244.1 3-dehydroquinate synthase -
  D16iCDA_RS13380 (D16iCDA_13385) - 2907206..2908807 (+) 1602 WP_070880243.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 714 a.a.        Molecular weight: 76320.57 Da        Isoelectric Point: 4.6899

>NTDB_id=571987 D16iCDA_RS13365 WP_070880246.1 2903374..2905518(+) (pilQ) [Phytopseudomonas seleniipraecipitans strain D1-6]
MNSSFSRLSVSLLAILLSPAALAANLQALDVAALPGDRVELKLSFDEPVTAPRGYTIEQPARIALDMPGVSNKLGVKNRE
LGMGNARSVTVVEAKDRTRLIINLTNLAPYNTRTEGNNLFVQVGTGVAMSAAPASTAAARPAPAPAAATPVAAPAAPKVF
GAVNKAISNIDFQRGTQGEGNIVIDLSDASVSPDIQERGGKIILNFNRTQLPEALRVRLDVKDFATPVQFVSASGTGDDA
SIVIEPVGAFDYLAYQTENKLTLSVKPLTPEDAEKRQAERFAYTGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVAG
NITLRLQNVPWDQALDLVLKTKGLDKRQIGNVLLVAPAEEIAARERQELESQKQIAELAPLRRELIQVNYAKAADMAKLF
QSVTSADGAVDERGSITVDERTNSIIAYQTQERLDELRRIVAQLDVAVRQVMIEARIVEANVNYGKSLGVRWGGAGVGGN
WSVYGKDGATTFEDGQAFLPGSSTVGNFEAEEGTAPVPFVDMGLANSTSGIGIGFLTNNVVLDLQLSAMESSGNGEIVSQ
PKVVTSDKETAKILRGQEIPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIMEVKVTKDSADYERAIAGGAPPINKN
EVNAKVLVADGETIVIGGVFENAQSKAVSKVPFLGDVPYLGRLFRRDMVTDNKTELLIFITPRIMNSQAVAVSR

Nucleotide


Download         Length: 2145 bp        

>NTDB_id=571987 D16iCDA_RS13365 WP_070880246.1 2903374..2905518(+) (pilQ) [Phytopseudomonas seleniipraecipitans strain D1-6]
ATGAACAGCTCTTTTTCACGCCTCAGCGTTTCGCTGCTGGCCATTCTGCTCTCTCCCGCAGCCCTGGCGGCCAACCTGCA
GGCGCTGGATGTCGCTGCGCTGCCGGGTGACCGTGTCGAGCTGAAACTGTCTTTTGACGAGCCTGTTACCGCGCCGCGTG
GTTATACCATCGAGCAGCCAGCACGTATTGCGCTGGATATGCCGGGCGTTTCCAACAAGCTGGGCGTCAAGAACCGTGAG
CTGGGAATGGGCAACGCCCGTAGCGTCACCGTGGTCGAGGCCAAGGACCGTACCCGCCTGATCATCAACCTGACCAACCT
GGCGCCGTACAACACGCGCACCGAAGGCAATAACCTGTTCGTGCAGGTCGGTACGGGCGTCGCCATGAGCGCAGCCCCTG
CCAGCACCGCTGCGGCACGCCCGGCCCCGGCCCCAGCAGCGGCGACGCCTGTTGCTGCGCCGGCAGCACCCAAGGTATTC
GGTGCGGTGAACAAGGCGATCAGCAATATCGACTTCCAGCGCGGCACACAGGGCGAAGGCAATATTGTCATTGACCTTTC
CGACGCCTCGGTAAGCCCTGATATCCAAGAGCGTGGCGGCAAGATCATCCTGAATTTCAACCGCACTCAATTGCCTGAAG
CACTGCGTGTGCGTCTCGACGTGAAAGATTTCGCCACGCCGGTGCAATTCGTCAGTGCCAGCGGCACGGGCGATGACGCC
AGCATTGTCATCGAGCCTGTCGGCGCGTTTGATTACCTGGCCTACCAGACCGAGAACAAGCTGACCCTGAGCGTCAAGCC
GCTAACCCCTGAAGATGCCGAGAAGCGTCAGGCCGAGCGTTTTGCCTACACAGGCGAGAAGCTGTCGCTTAACTTCCAGG
ACATCGACGTGCGTTCGGTGCTGCAGTTGATCGCCGATTTCACCGACCTCAACCTGGTCGCCAGTGACACGGTTGCCGGC
AACATCACCTTGCGCCTGCAGAACGTGCCGTGGGATCAGGCACTGGATCTGGTGTTAAAAACCAAAGGTCTCGACAAGCG
TCAGATCGGCAACGTACTGCTGGTTGCTCCGGCTGAGGAAATTGCTGCTCGCGAGCGGCAGGAGCTTGAGTCGCAGAAGC
AGATCGCCGAGCTGGCTCCGCTGCGTCGCGAGCTGATTCAGGTCAACTACGCCAAGGCAGCCGACATGGCCAAGCTGTTC
CAGTCGGTGACCAGCGCTGATGGTGCCGTCGATGAGCGCGGCTCCATCACTGTCGATGAGCGCACCAACAGCATCATTGC
CTACCAGACTCAGGAGCGCCTGGACGAGCTGCGCCGCATTGTGGCTCAGCTGGACGTGGCAGTGCGCCAGGTGATGATCG
AGGCGCGGATCGTGGAAGCCAACGTTAACTACGGCAAATCCCTCGGCGTGCGCTGGGGTGGTGCAGGTGTCGGTGGTAAC
TGGAGCGTATATGGCAAGGACGGTGCCACCACGTTCGAAGACGGCCAGGCATTCCTTCCAGGCTCCAGCACTGTTGGCAA
CTTCGAAGCCGAGGAAGGTACGGCGCCCGTTCCATTCGTTGATATGGGGCTCGCCAACAGCACTTCGGGTATTGGTATTG
GCTTCCTGACCAATAACGTGGTTCTGGATCTGCAGCTCTCTGCCATGGAAAGCTCCGGCAACGGCGAAATCGTTTCCCAG
CCAAAGGTCGTCACCTCTGACAAGGAAACCGCGAAGATTCTGCGCGGCCAGGAAATTCCTTATCAGGAAGCCAGCTCCAG
CGGTGCGACCTCCACGTCGTTCAAGGAAGCCGCTCTGTCGCTGGAAGTGACTCCGCAGATTACGCCCGACAATCGCATCA
TCATGGAAGTCAAAGTCACCAAGGACTCGGCTGACTATGAGCGCGCGATCGCTGGTGGGGCGCCGCCGATCAACAAGAAC
GAAGTCAACGCCAAGGTTCTCGTAGCTGACGGCGAGACAATTGTGATCGGCGGTGTATTCGAGAATGCGCAGAGTAAAGC
GGTGTCGAAGGTTCCGTTTCTCGGGGATGTCCCTTATTTGGGAAGGCTGTTCCGCCGCGACATGGTCACCGACAACAAGA
CCGAGTTGCTGATTTTCATCACGCCGCGCATCATGAACAGTCAAGCGGTGGCCGTGAGTCGGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(385-450)

Bacterial type II and III secretion system protein (Secretin)

(548-705)

AMIN domain (AMIN)

(38-123)

Secretin and TonB N terminus short domain (STN)

(311-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G7LW76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

74.687

100

0.752
  pilQ Acinetobacter baumannii strain A118

39.333

100

0.413
  pilQ Acinetobacter baumannii D1279779

39.333

100

0.413
  comQ Acinetobacter baylyi ADP1

40.594

99.02

0.402