Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KME82_RS01825 Genome accession   NZ_CP076103
Coordinates   453587..455110 (-) Length   507 a.a.
NCBI ID   WP_215497022.1    Uniprot ID   -
Organism   Lysobacter capsici strain NF87_2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 448587..460110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KME82_RS01805 (KME82_01805) - 449036..449191 (-) 156 WP_187313323.1 hypothetical protein -
  KME82_RS01810 (KME82_01810) - 449316..450146 (-) 831 WP_215497019.1 AraC family transcriptional regulator -
  KME82_RS01815 (KME82_01815) - 450440..452011 (+) 1572 WP_215497020.1 GNAT family N-acetyltransferase -
  KME82_RS01820 (KME82_01820) - 452044..453435 (+) 1392 WP_215497021.1 FAD-binding oxidoreductase -
  KME82_RS01825 (KME82_01825) comM 453587..455110 (-) 1524 WP_215497022.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KME82_RS01830 (KME82_01830) - 455121..455387 (-) 267 WP_215497023.1 accessory factor UbiK family protein -
  KME82_RS01835 (KME82_01835) - 455720..456058 (+) 339 WP_036114992.1 P-II family nitrogen regulator -
  KME82_RS01840 (KME82_01840) - 456170..457063 (-) 894 WP_215497024.1 LysR family transcriptional regulator -
  KME82_RS01845 (KME82_01845) - 457243..458229 (+) 987 WP_286673227.1 YeiH family protein -
  KME82_RS01850 (KME82_01850) - 458290..458799 (-) 510 WP_215497025.1 hypothetical protein -
  KME82_RS01855 (KME82_01855) speE 458953..459807 (-) 855 WP_215497026.1 polyamine aminopropyltransferase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 53592.45 Da        Isoelectric Point: 8.5218

>NTDB_id=571830 KME82_RS01825 WP_215497022.1 453587..455110(-) (comM) [Lysobacter capsici strain NF87_2]
MNLALVHSRARSGVRAPAVRVEVHLAGGLPSMSIVGLPEAAVREAKDRVRAAIQCAQFEFPQRRITVNLAPADLPKDGGR
YDLAIALGILAASGQIPLDALNGCEFLGELGLTGELRAIDGVLPAALAAADAGHRLVVPAGNGAEAALAGRVEARTGRTL
LEVCAMLSGQKSLPEAVALPVVRVAGPDMLDVRGQAQARRALEIAAAGGHHLLLIGPPGCGKTLLASRLPGLLPEASEAE
ALETAAIASVSGGAHGRGLDPARWRERPFRSPHHTASAVALVGGGADPRPGEISLAHQGVLFLDELPEWERRALEVLREP
LESGMVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDSSGRCRCAGDAIRRYRARISGPLLDRIDLHIEVPRLPPSHLRP
DQPGGECSEAIRARVVLARQRQQARSGRINAQLNQAETTATCRLHERDHELLERAVESLQLSARSMHRILRVARTIADLA
GSEAIATAHLTEAIGYRRADRGVQAAA

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=571830 KME82_RS01825 WP_215497022.1 453587..455110(-) (comM) [Lysobacter capsici strain NF87_2]
ATGAATCTGGCACTCGTGCATAGCCGTGCGCGATCGGGCGTCCGTGCGCCCGCGGTCAGGGTCGAGGTGCATCTGGCCGG
CGGCCTGCCGAGCATGTCGATCGTCGGCCTGCCCGAGGCCGCGGTGCGCGAAGCCAAGGATCGGGTGCGCGCGGCGATCC
AGTGCGCGCAGTTCGAATTCCCGCAGCGGCGCATCACCGTCAATCTGGCCCCGGCCGACCTGCCGAAAGACGGCGGCCGC
TACGATCTGGCGATCGCGCTCGGCATCCTCGCCGCGAGCGGGCAGATTCCGCTCGACGCCTTGAACGGCTGCGAGTTTCT
CGGCGAACTCGGCCTCACCGGCGAACTGCGCGCGATCGACGGCGTACTGCCGGCGGCGCTGGCCGCGGCCGATGCCGGGC
ATCGCCTGGTCGTGCCGGCCGGCAACGGCGCCGAAGCCGCGCTCGCCGGCCGGGTCGAGGCGCGCACCGGCCGCACCTTG
CTGGAAGTGTGCGCGATGCTCAGCGGGCAAAAGTCACTGCCCGAGGCGGTCGCCTTGCCGGTGGTGCGCGTCGCCGGGCC
GGACATGCTCGACGTGCGCGGCCAGGCGCAGGCGCGGCGTGCGCTCGAAATCGCCGCGGCCGGCGGCCACCACCTGCTGC
TGATCGGCCCGCCCGGCTGCGGCAAGACCTTGCTCGCATCGCGATTGCCCGGCCTGTTGCCCGAAGCCAGCGAGGCCGAA
GCCCTGGAAACCGCGGCGATCGCCTCGGTCAGCGGCGGCGCGCACGGGCGCGGGCTCGATCCGGCGCGCTGGCGCGAGCG
GCCGTTCCGATCGCCGCACCACACCGCCAGCGCGGTCGCCTTGGTCGGCGGCGGCGCCGATCCGCGGCCCGGGGAAATTT
CGTTGGCCCATCAGGGCGTGCTGTTTCTCGACGAATTGCCCGAATGGGAACGGCGCGCATTGGAAGTGCTGCGCGAACCG
CTGGAGTCGGGCATGGTGACGGTGTCGCGCGCGGCGCGCAGCGCCGAGTTCCCGGCGCGGTTCCAGCTGGTCGCGGCGAT
GAACCCCTGCCCCTGCGGCTGGGCCGGCGACAGCAGCGGCCGCTGCCGTTGCGCCGGCGACGCGATCCGCCGCTACCGCG
CGCGCATCTCCGGCCCCCTGCTCGATCGCATCGACCTGCACATCGAAGTGCCGCGCCTGCCGCCCTCGCACCTGCGCCCG
GATCAACCCGGCGGCGAATGCTCCGAAGCCATTCGTGCGCGCGTCGTGCTGGCGCGGCAACGGCAGCAAGCGCGCAGCGG
CCGCATCAACGCCCAGCTCAATCAAGCCGAGACCACCGCGACCTGCCGCCTGCACGAACGCGATCACGAACTGCTCGAAC
GCGCGGTCGAAAGCCTGCAACTGTCGGCGCGTTCGATGCACCGGATCCTGCGCGTGGCCCGCACCATCGCCGATCTGGCC
GGCAGCGAGGCGATCGCCACCGCGCATCTGACCGAAGCGATCGGCTATCGGCGCGCCGATCGTGGGGTTCAGGCCGCGGC
GTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.268

99.211

0.548
  comM Vibrio campbellii strain DS40M4

54.076

99.211

0.536
  comM Glaesserella parasuis strain SC1401

52.529

100

0.533
  comM Haemophilus influenzae Rd KW20

52.25

100

0.527
  comM Legionella pneumophila str. Paris

50.598

99.014

0.501
  comM Legionella pneumophila strain ERS1305867

50.598

99.014

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.686

100

0.46