Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KLP38_RS01690 Genome accession   NZ_CP076060
Coordinates   360700..361275 (+) Length   191 a.a.
NCBI ID   WP_215529188.1    Uniprot ID   -
Organism   Cupriavidus sp. EM10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 355700..366275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KLP38_RS01680 (KLP38_01680) uvrA 355955..358818 (-) 2864 Protein_340 excinuclease ABC subunit UvrA -
  KLP38_RS01685 (KLP38_01685) - 359215..360465 (+) 1251 WP_215529187.1 MFS transporter -
  KLP38_RS01690 (KLP38_01690) ssb 360700..361275 (+) 576 WP_215529188.1 single-stranded DNA-binding protein Machinery gene
  KLP38_RS01695 (KLP38_01695) - 361614..362312 (+) 699 WP_215529189.1 hydrolase -
  KLP38_RS01700 (KLP38_01700) - 362377..362559 (+) 183 WP_215529190.1 hypothetical protein -
  KLP38_RS01705 (KLP38_01705) - 362875..363663 (+) 789 WP_215529191.1 amino acid ABC transporter substrate-binding protein -
  KLP38_RS01710 (KLP38_01710) - 363751..364404 (+) 654 WP_215529192.1 amino acid ABC transporter permease -
  KLP38_RS01715 (KLP38_01715) - 364433..365182 (+) 750 WP_215530240.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 19567.21 Da        Isoelectric Point: 5.9566

>NTDB_id=571740 KLP38_RS01690 WP_215529188.1 360700..361275(+) (ssb) [Cupriavidus sp. EM10]
MASVNKVILVGNLGADPETRYMPSGDAVTNIRLATTDRYKDKQSGEFKEATEWHRIAFFGKLAEIAGQYLRKGSSVYIEG
RIRTRKWQDQSGQDKYSTEIVADQMQMLGARQGGGGGEEGGYGGGGGGGGGGGGYSRESQGGGGGGGGYGGGGAGGRGQG
GGGAGGQQGGQRRQQQAPSNGFEDMDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=571740 KLP38_RS01690 WP_215529188.1 360700..361275(+) (ssb) [Cupriavidus sp. EM10]
ATGGCATCGGTCAACAAAGTCATTCTCGTCGGCAACCTGGGCGCCGACCCCGAAACCCGCTACATGCCCAGCGGCGACGC
CGTGACCAACATCCGGCTCGCGACGACCGACCGCTACAAGGACAAGCAGAGCGGCGAGTTCAAGGAAGCCACGGAATGGC
ACCGCATCGCGTTCTTCGGCAAGCTGGCCGAGATCGCCGGCCAGTACCTGCGCAAGGGTTCGTCGGTCTATATCGAAGGC
CGCATCCGCACCCGCAAGTGGCAGGACCAGTCGGGCCAGGACAAGTACAGCACCGAAATCGTGGCTGACCAGATGCAAAT
GCTGGGCGCGCGCCAGGGCGGCGGCGGTGGCGAGGAAGGCGGCTACGGCGGCGGTGGTGGCGGCGGTGGTGGCGGCGGTG
GCTACAGCCGCGAATCGCAAGGCGGTGGCGGTGGCGGTGGCGGCTACGGCGGCGGCGGCGCCGGCGGCCGTGGCCAGGGT
GGCGGCGGTGCCGGCGGCCAGCAAGGCGGCCAGCGCCGTCAGCAGCAAGCCCCGTCGAACGGCTTCGAGGACATGGACGA
CGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.746

100

0.513
  ssb Glaesserella parasuis strain SC1401

48.691

100

0.487
  ssb Neisseria meningitidis MC58

42.932

100

0.429
  ssb Neisseria gonorrhoeae MS11

43.386

98.953

0.429
  ssbA Bacillus subtilis subsp. subtilis str. 168

34.804

100

0.372