Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KB891_RS01710 Genome accession   NZ_CP076049
Coordinates   364010..364561 (+) Length   183 a.a.
NCBI ID   WP_017514424.1    Uniprot ID   -
Organism   Cupriavidus metallidurans strain YL2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 359010..369561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KB891_RS01700 (KB891_01700) uvrA 359429..362296 (-) 2868 WP_024569508.1 excinuclease ABC subunit UvrA -
  KB891_RS01705 (KB891_01705) - 362571..363827 (+) 1257 WP_024569507.1 MFS transporter -
  KB891_RS01710 (KB891_01710) ssb 364010..364561 (+) 552 WP_017514424.1 single-stranded DNA-binding protein Machinery gene
  KB891_RS01715 (KB891_01715) - 364968..367190 (+) 2223 WP_017514425.1 hypothetical protein -
  KB891_RS01720 (KB891_01720) - 367505..368698 (-) 1194 WP_024569506.1 MFS transporter -
  KB891_RS01725 (KB891_01725) arsH 368717..369481 (-) 765 WP_017510957.1 arsenical resistance protein ArsH -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19119.80 Da        Isoelectric Point: 5.9566

>NTDB_id=571664 KB891_RS01710 WP_017514424.1 364010..364561(+) (ssb) [Cupriavidus metallidurans strain YL2]
MASVNKVILVGNLGADPETRYMPSGDAVTNIRLATTDRYKDKQSGEFKEATEWHRIAFFGKLAEIAGQYLRKGSSVYIEG
RIRTRKWQDQSGQEKYSTEIVADQMQMLGGRGQGGGGGGDEGGYGGGAGAGAGGGGGYSRESQGGGGRSQGGGAQGGGQQ
GGQRRQQQAPSNGFEDMDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=571664 KB891_RS01710 WP_017514424.1 364010..364561(+) (ssb) [Cupriavidus metallidurans strain YL2]
ATGGCATCGGTCAACAAAGTCATTCTCGTCGGCAACCTGGGCGCCGACCCCGAAACCCGCTACATGCCCAGCGGCGATGC
CGTGACCAACATCCGGCTGGCGACGACCGACCGCTACAAGGACAAGCAGTCCGGCGAATTCAAGGAAGCCACCGAGTGGC
ACCGCATCGCGTTCTTCGGCAAGCTGGCCGAGATCGCCGGCCAGTACCTGCGCAAGGGTTCGTCGGTCTATATCGAGGGC
CGCATCCGCACGCGCAAGTGGCAGGACCAGTCCGGTCAGGAAAAGTACAGCACCGAAATCGTCGCGGACCAGATGCAGAT
GCTGGGTGGCCGTGGCCAGGGCGGTGGTGGCGGTGGCGATGAAGGCGGCTACGGCGGCGGTGCCGGTGCCGGTGCGGGCG
GTGGCGGTGGCTACAGCCGCGAATCGCAAGGCGGTGGTGGCCGCAGCCAGGGCGGTGGTGCCCAGGGCGGCGGTCAGCAA
GGCGGCCAGCGTCGCCAGCAACAGGCACCGTCGAACGGCTTCGAGGATATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.439

100

0.552
  ssb Glaesserella parasuis strain SC1401

49.457

100

0.497
  ssb Neisseria meningitidis MC58

45.856

98.907

0.454
  ssb Neisseria gonorrhoeae MS11

45.304

98.907

0.448
  ssbA Bacillus subtilis subsp. subtilis str. 168

34.694

100

0.372