Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KB891_RS01315 Genome accession   NZ_CP076049
Coordinates   286307..287845 (-) Length   512 a.a.
NCBI ID   WP_024569299.1    Uniprot ID   A0A482IJN8
Organism   Cupriavidus metallidurans strain YL2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 281307..292845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KB891_RS01290 (KB891_01290) - 283461..284000 (-) 540 WP_008652614.1 TlpA disulfide reductase family protein -
  KB891_RS01295 (KB891_01295) - 284129..284626 (-) 498 WP_017511805.1 SoxW family protein -
  KB891_RS01300 (KB891_01300) - 284759..285346 (+) 588 WP_029306767.1 hypothetical protein -
  KB891_RS01305 (KB891_01305) - 285389..286033 (+) 645 WP_008652617.1 LysE family transporter -
  KB891_RS01310 (KB891_01310) - 286115..286255 (+) 141 WP_155877842.1 hypothetical protein -
  KB891_RS01315 (KB891_01315) comM 286307..287845 (-) 1539 WP_024569299.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KB891_RS01320 (KB891_01320) - 287928..288185 (-) 258 WP_008652257.1 accessory factor UbiK family protein -
  KB891_RS01325 (KB891_01325) - 288738..289538 (+) 801 WP_017513634.1 TorF family putative porin -
  KB891_RS01330 (KB891_01330) - 289591..289929 (+) 339 WP_008652254.1 P-II family nitrogen regulator -
  KB891_RS01335 (KB891_01335) - 289961..291511 (+) 1551 WP_017513633.1 ammonium transporter -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 55265.10 Da        Isoelectric Point: 7.5536

>NTDB_id=571661 KB891_RS01315 WP_024569299.1 286307..287845(-) (comM) [Cupriavidus metallidurans strain YL2]
MSLAVLRSRALTGIEAPPVSVEIHLANGLPAFNIVGLADTEVRESRERVRAALLNSEFEFPNRRITVNLAPADLPKESGR
FDLAIALGILAASGQLQADTLDAFEFAGELSLAGDLRPVRGALAMAMGLARDNARRVAEDRPPRAFVVASENGAEAALVE
AVIVHAGATLRDVCHHIGLLPERPLPRARPPARVEVSADGPDMRDVRGQAQARRAMEIAAAGQHSVLLVGPPGTGKSMLA
QRFPALLPPMTEAEALEAAAVQSLTSGGFHPSRWGHRPFRSPHHTASAPALVGGGASPRPGEISLAHHGVLFLDELPEFE
RRVLEVLREPLETGRITISRAAGQADFPARFQFVAAMNPCPCGYLGHPTRMCRCTPDQVQRYQSRLSGPLLDRVDLQIEV
PAQSQQEMFDGQPGEPSQTVRARAVAARERQMTRQGTPNSELAGRAIETHCPLDDEARTLLRDAMQKLGWSARAYFRVLK
VARTIADLDGAEVLTAGHVAEAIQYRRVLRTA

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=571661 KB891_RS01315 WP_024569299.1 286307..287845(-) (comM) [Cupriavidus metallidurans strain YL2]
ATGAGCCTGGCCGTCCTGCGCAGCCGCGCCCTGACTGGAATCGAGGCACCGCCCGTCTCCGTCGAAATCCACCTCGCGAA
CGGGTTGCCCGCCTTCAATATCGTCGGGCTGGCCGATACCGAAGTCCGCGAGAGCCGCGAGCGCGTACGCGCGGCACTGC
TCAACAGCGAGTTCGAATTTCCCAACCGGCGCATCACGGTCAACCTGGCGCCCGCCGATCTGCCCAAGGAGTCCGGCCGT
TTCGACCTGGCGATTGCACTGGGCATCCTGGCGGCCAGCGGGCAGTTGCAGGCCGATACGCTCGACGCCTTCGAGTTCGC
CGGCGAGCTTTCGCTGGCGGGGGATCTGCGCCCGGTACGCGGCGCGCTCGCGATGGCAATGGGACTGGCTCGCGATAACG
CCCGACGCGTGGCGGAGGATCGCCCGCCGCGCGCCTTCGTCGTCGCCAGCGAGAATGGCGCGGAAGCGGCCCTGGTCGAA
GCCGTGATCGTGCATGCCGGCGCGACGCTGCGCGACGTCTGCCATCACATCGGGCTGCTTCCCGAGCGGCCGCTGCCGCG
CGCCCGGCCGCCAGCCCGGGTTGAGGTATCCGCCGATGGTCCCGATATGCGCGACGTTCGCGGCCAGGCACAAGCCCGAC
GCGCCATGGAGATCGCCGCCGCGGGCCAGCACTCCGTACTGCTGGTCGGCCCGCCCGGCACTGGCAAATCGATGCTGGCC
CAGCGCTTCCCTGCCCTGCTGCCGCCGATGACCGAGGCCGAAGCGCTCGAGGCAGCGGCCGTGCAGAGCCTGACCTCGGG
CGGCTTCCACCCGTCCCGCTGGGGCCATCGCCCGTTCCGCAGTCCGCACCATACGGCCAGCGCGCCTGCCCTGGTCGGCG
GGGGCGCCTCGCCACGCCCTGGGGAAATATCGCTGGCGCATCACGGCGTGCTCTTTCTCGACGAACTGCCCGAGTTCGAG
CGGCGCGTGCTCGAAGTCCTGCGCGAGCCGCTCGAAACCGGCCGCATCACGATCTCGCGTGCCGCCGGGCAGGCCGATTT
CCCGGCGCGCTTCCAGTTCGTGGCGGCGATGAATCCCTGCCCTTGCGGCTACCTCGGGCATCCCACCCGCATGTGCCGCT
GCACGCCGGATCAGGTGCAGCGTTACCAGTCACGCCTGTCGGGCCCGTTGCTCGACCGCGTGGACCTGCAAATCGAAGTG
CCCGCCCAGAGCCAGCAGGAAATGTTCGATGGACAGCCGGGCGAACCGAGCCAGACCGTGCGCGCCCGCGCCGTCGCCGC
ACGCGAACGTCAAATGACACGACAAGGCACGCCGAACAGCGAACTAGCCGGTCGCGCGATCGAGACACACTGCCCACTCG
ACGACGAGGCCCGAACGCTGCTGCGCGACGCGATGCAGAAGCTGGGATGGTCGGCGCGCGCGTACTTCCGGGTGCTCAAG
GTAGCCAGAACGATCGCGGACCTGGATGGCGCGGAGGTTCTGACAGCCGGCCACGTGGCCGAGGCGATTCAGTACCGGCG
CGTGCTGCGAACCGCCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-407)

Subunit ChlI of Mg-chelatase (ChlI)

(21-137)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A482IJN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.085

99.023

0.506
  comM Vibrio campbellii strain DS40M4

50.685

99.805

0.506
  comM Haemophilus influenzae Rd KW20

50.291

100

0.506
  comM Legionella pneumophila strain ERS1305867

48.438

100

0.484
  comM Legionella pneumophila str. Paris

48.438

100

0.484
  comM Glaesserella parasuis strain SC1401

48.242

100

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.243

100

0.437