Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   KH238_RS10150 Genome accession   NZ_CP076045
Coordinates   2149657..2149992 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain VCN56     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2144657..2154992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH238_RS10130 (KH238_10130) gcvT 2145263..2146363 (-) 1101 WP_032866432.1 glycine cleavage system aminomethyltransferase GcvT -
  KH238_RS10135 (KH238_10135) - 2146787..2148457 (+) 1671 WP_007408331.1 SNF2-related protein -
  KH238_RS10140 (KH238_10140) - 2148479..2149273 (+) 795 WP_007408330.1 YqhG family protein -
  KH238_RS10145 (KH238_10145) sinI 2149450..2149623 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  KH238_RS10150 (KH238_10150) sinR 2149657..2149992 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  KH238_RS10155 (KH238_10155) - 2150040..2150825 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  KH238_RS10160 (KH238_10160) - 2150890..2151474 (-) 585 WP_015240205.1 signal peptidase I SipW -
  KH238_RS10165 (KH238_10165) tapA 2151446..2152117 (-) 672 WP_020954230.1 amyloid fiber anchoring/assembly protein TapA -
  KH238_RS10170 (KH238_10170) - 2152376..2152705 (+) 330 WP_020954231.1 DUF3889 domain-containing protein -
  KH238_RS10175 (KH238_10175) - 2152745..2152924 (-) 180 WP_003153093.1 YqzE family protein -
  KH238_RS10180 (KH238_10180) comGG 2152981..2153358 (-) 378 WP_032866434.1 competence type IV pilus minor pilin ComGG Machinery gene
  KH238_RS19570 comGF 2153359..2153526 (-) 168 WP_235183824.1 ComGF family competence protein Machinery gene
  KH238_RS19575 - 2153523..2153717 (-) 195 WP_225917419.1 hypothetical protein -
  KH238_RS10190 (KH238_10190) comGE 2153761..2154075 (-) 315 WP_007408323.1 competence type IV pilus minor pilin ComGE -
  KH238_RS10195 (KH238_10195) comGD 2154059..2154496 (-) 438 WP_007408322.1 competence type IV pilus minor pilin ComGD Machinery gene
  KH238_RS10200 (KH238_10200) comGC 2154486..2154752 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=571612 KH238_RS10150 WP_003153104.1 2149657..2149992(+) (sinR) [Bacillus velezensis strain VCN56]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=571612 KH238_RS10150 WP_003153104.1 2149657..2149992(+) (sinR) [Bacillus velezensis strain VCN56]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991