Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   KH238_RS10200 Genome accession   NZ_CP076045
Coordinates   2154486..2154752 (-) Length   88 a.a.
NCBI ID   WP_042635730.1    Uniprot ID   -
Organism   Bacillus velezensis strain VCN56     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2149486..2159752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH238_RS10150 (KH238_10150) sinR 2149657..2149992 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  KH238_RS10155 (KH238_10155) - 2150040..2150825 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  KH238_RS10160 (KH238_10160) - 2150890..2151474 (-) 585 WP_015240205.1 signal peptidase I SipW -
  KH238_RS10165 (KH238_10165) tapA 2151446..2152117 (-) 672 WP_020954230.1 amyloid fiber anchoring/assembly protein TapA -
  KH238_RS10170 (KH238_10170) - 2152376..2152705 (+) 330 WP_020954231.1 DUF3889 domain-containing protein -
  KH238_RS10175 (KH238_10175) - 2152745..2152924 (-) 180 WP_003153093.1 YqzE family protein -
  KH238_RS10180 (KH238_10180) comGG 2152981..2153358 (-) 378 WP_032866434.1 competence type IV pilus minor pilin ComGG Machinery gene
  KH238_RS19570 comGF 2153359..2153526 (-) 168 WP_235183824.1 ComGF family competence protein Machinery gene
  KH238_RS19575 - 2153523..2153717 (-) 195 WP_225917419.1 hypothetical protein -
  KH238_RS10190 (KH238_10190) comGE 2153761..2154075 (-) 315 WP_007408323.1 competence type IV pilus minor pilin ComGE -
  KH238_RS10195 (KH238_10195) comGD 2154059..2154496 (-) 438 WP_007408322.1 competence type IV pilus minor pilin ComGD Machinery gene
  KH238_RS10200 (KH238_10200) comGC 2154486..2154752 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  KH238_RS10205 (KH238_10205) comGB 2154799..2155836 (-) 1038 WP_032866436.1 competence type IV pilus assembly protein ComGB Machinery gene
  KH238_RS10210 (KH238_10210) comGA 2155823..2156893 (-) 1071 WP_012117985.1 competence type IV pilus ATPase ComGA Machinery gene
  KH238_RS10215 (KH238_10215) - 2157085..2158035 (-) 951 WP_015417820.1 magnesium transporter CorA family protein -
  KH238_RS10220 (KH238_10220) - 2158181..2159482 (+) 1302 WP_032866438.1 hemolysin family protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9721.32 Da        Isoelectric Point: 6.2027

>NTDB_id=571615 KH238_RS10200 WP_042635730.1 2154486..2154752(-) (comGC) [Bacillus velezensis strain VCN56]
MLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIKKNTACPNGKQILIS
GGEVTVEQ

Nucleotide


Download         Length: 267 bp        

>NTDB_id=571615 KH238_RS10200 WP_042635730.1 2154486..2154752(-) (comGC) [Bacillus velezensis strain VCN56]
ATGCTGATTGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCA
GCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGC
CGGATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGT
GGCGGAGAAGTTACAGTTGAACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

74.648

80.682

0.602