Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KKZ03_RS16040 Genome accession   NZ_CP076024
Coordinates   3564426..3564920 (-) Length   164 a.a.
NCBI ID   WP_243217803.1    Uniprot ID   -
Organism   Methylobacter sp. S3L5C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3559426..3569920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKZ03_RS16025 (KKZ03_15940) - 3559463..3561490 (-) 2028 WP_243217800.1 hypothetical protein -
  KKZ03_RS16030 (KKZ03_15945) - 3561483..3563024 (-) 1542 WP_243217801.1 site-specific integrase -
  KKZ03_RS16035 (KKZ03_15950) - 3563014..3564267 (-) 1254 WP_243217802.1 site-specific integrase -
  KKZ03_RS16040 (KKZ03_15955) ssb 3564426..3564920 (-) 495 WP_243217803.1 single-stranded DNA-binding protein Machinery gene
  KKZ03_RS16045 (KKZ03_15960) - 3565317..3565856 (+) 540 WP_243217804.1 YaeQ family protein -
  KKZ03_RS16050 (KKZ03_15965) - 3565992..3567578 (+) 1587 WP_243217805.1 ABC-F family ATPase -
  KKZ03_RS16055 (KKZ03_15970) - 3567834..3569438 (+) 1605 WP_371744752.1 YdiU family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18265.30 Da        Isoelectric Point: 6.2399

>NTDB_id=571355 KKZ03_RS16040 WP_243217803.1 3564426..3564920(-) (ssb) [Methylobacter sp. S3L5C]
MLNKVTLIGRLGADPEVRYMPTGGAVANITLATNFRWKDKQSGEKKESTEWHRVVFFNRLAEIAGEYLKKGSQLYVEGRL
QTRKWQGQDGLDRYTTEIIATEMHMLDSRSGGTSNFGGDQAQMGGHSAPSSKPAYQPQQPAQQNNPGSTPPLPNYDDFDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=571355 KKZ03_RS16040 WP_243217803.1 3564426..3564920(-) (ssb) [Methylobacter sp. S3L5C]
ATGCTTAATAAAGTAACGTTAATTGGCCGGTTGGGTGCTGATCCTGAAGTCCGTTATATGCCAACGGGTGGTGCTGTAGC
GAACATAACCTTGGCGACTAATTTTAGGTGGAAGGATAAACAATCAGGCGAGAAAAAAGAATCTACTGAATGGCATAGAG
TGGTCTTTTTTAACCGTTTGGCTGAAATTGCCGGTGAATACTTAAAAAAAGGCAGTCAGCTTTATGTAGAAGGGCGTTTG
CAAACGCGAAAATGGCAAGGGCAGGATGGACTGGATCGCTATACTACCGAAATAATTGCCACAGAAATGCACATGTTGGA
CAGTCGTAGTGGCGGTACCAGCAATTTTGGCGGTGATCAAGCACAGATGGGCGGGCATTCTGCACCATCATCCAAACCTG
CATACCAGCCTCAGCAACCCGCACAGCAAAATAATCCGGGATCGACTCCTCCGCTCCCTAATTATGATGATTTTGATGAC
GATATACCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.069

100

0.591
  ssb Glaesserella parasuis strain SC1401

49.451

100

0.549
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.518
  ssb Neisseria meningitidis MC58

47.727

100

0.512
  ssbA Bacillus subtilis subsp. subtilis str. 168

38.286

100

0.409