Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KKZ03_RS09350 Genome accession   NZ_CP076024
Coordinates   2069424..2070932 (-) Length   502 a.a.
NCBI ID   WP_243221219.1    Uniprot ID   -
Organism   Methylobacter sp. S3L5C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2064424..2075932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKZ03_RS09335 (KKZ03_09290) rep 2065064..2067085 (-) 2022 WP_243221216.1 DNA helicase Rep -
  KKZ03_RS09340 (KKZ03_09295) - 2067513..2068265 (-) 753 WP_243221217.1 PhoH family protein -
  KKZ03_RS09345 (KKZ03_09300) - 2068954..2069355 (+) 402 WP_243221218.1 hypothetical protein -
  KKZ03_RS09350 (KKZ03_09305) comM 2069424..2070932 (-) 1509 WP_243221219.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KKZ03_RS09355 (KKZ03_09310) - 2071228..2071488 (-) 261 WP_243221220.1 accessory factor UbiK family protein -
  KKZ03_RS09360 (KKZ03_09315) speE 2071558..2072406 (-) 849 WP_243221221.1 polyamine aminopropyltransferase -
  KKZ03_RS09365 (KKZ03_09320) speA 2072492..2074330 (+) 1839 WP_243221222.1 biosynthetic arginine decarboxylase -
  KKZ03_RS09370 (KKZ03_09325) - 2074332..2075174 (+) 843 WP_243221223.1 NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54501.82 Da        Isoelectric Point: 8.2119

>NTDB_id=571350 KKZ03_RS09350 WP_243221219.1 2069424..2070932(-) (comM) [Methylobacter sp. S3L5C]
MGLAVIFSRGRSGIEAPLVMVEVHISNGLPALNIVGLPETAVKESKDRVRGALLNSRFEFPAQRITVNLAPADLPKEGGR
FDLAIALGILAASGQIPQANLKQYECIGELSLGGELRPVKGVLPIAIQARNHKRKLILPKENTAEAALVKGIEIIPALHL
LEVCAHLSGQTQIQPEFQQTEPPEPKDDLDFADVHGQYHVKRAFEIAAAGAHNLIMLGPPGTGKSMIAARLPTILPLLTE
QQAQETAAIASISDQGLDVANWLKPPYRAPHHTASAAALVGGGSNPRPGEISLAHNGTLFLDELPEFDRRVLEVLREPLE
TGHITISRAARQVDFPARFQLIAAMNPCPCGYLGDASGRCHCSSEQVMRYRARVSGPLLDRIDMHLEVPRISHEVLRKGT
PGGEESSATIRARVVAARNMAVARSGKANSELTAKEVKKLCVLSEQSHQLLEQAMDKFGLSHRAYHRILKLARTIADLAN
SEHIEIKHLSEAISYRKLDRSV

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=571350 KKZ03_RS09350 WP_243221219.1 2069424..2070932(-) (comM) [Methylobacter sp. S3L5C]
ATGGGCTTAGCTGTTATCTTTAGCCGGGGACGTTCAGGAATCGAAGCACCTCTGGTAATGGTTGAAGTTCATATTTCTAA
CGGCTTACCTGCGTTAAATATTGTCGGCTTGCCGGAAACTGCCGTCAAAGAGAGTAAAGACCGTGTTCGGGGTGCGTTAT
TAAATTCCCGCTTTGAATTTCCCGCCCAGCGCATTACCGTCAATCTGGCCCCTGCCGATTTACCGAAAGAAGGTGGTCGT
TTTGATTTAGCCATTGCTTTAGGAATTTTAGCGGCGTCCGGCCAAATCCCCCAGGCTAATCTTAAGCAATATGAATGTAT
TGGCGAACTGTCCCTGGGTGGAGAATTACGCCCTGTCAAAGGCGTTCTTCCTATTGCCATACAAGCCAGAAATCACAAAA
GAAAACTAATCCTGCCCAAAGAAAATACCGCCGAAGCTGCTCTGGTTAAAGGTATTGAAATTATCCCCGCATTACACTTG
TTAGAAGTCTGTGCTCATCTCAGCGGACAGACACAAATACAACCCGAATTTCAACAAACCGAACCACCAGAACCTAAAGA
TGACCTGGATTTTGCGGATGTCCATGGCCAATATCATGTTAAAAGAGCTTTTGAAATTGCCGCCGCCGGTGCACATAATT
TAATTATGCTTGGGCCTCCCGGCACCGGAAAATCCATGATTGCCGCACGATTGCCGACTATTTTACCGTTATTAACCGAA
CAACAAGCCCAAGAAACTGCCGCTATTGCTTCTATTAGCGATCAAGGTCTGGATGTTGCCAACTGGCTAAAACCGCCTTA
TCGCGCACCTCATCATACCGCCTCAGCGGCGGCTTTGGTCGGCGGCGGCAGTAATCCCAGGCCGGGCGAAATATCCCTCG
CTCACAACGGGACGTTATTTCTTGATGAATTGCCTGAATTTGATCGTAGGGTATTGGAAGTTTTACGCGAACCCCTGGAG
ACAGGACATATCACTATTTCACGCGCAGCCCGGCAAGTTGATTTTCCGGCACGCTTTCAGTTAATTGCCGCAATGAACCC
CTGTCCTTGCGGCTATTTGGGTGATGCCTCCGGGCGCTGTCATTGCTCCTCGGAACAAGTCATGCGGTATCGGGCAAGAG
TATCTGGGCCGTTATTGGATCGCATTGATATGCACCTGGAAGTGCCGCGCATATCCCATGAAGTGTTGCGCAAAGGTACA
CCGGGCGGCGAGGAAAGCAGCGCGACCATCAGAGCACGTGTAGTCGCTGCACGCAACATGGCGGTAGCGCGTAGCGGCAA
AGCGAATTCTGAATTAACCGCAAAAGAAGTTAAAAAGCTATGCGTACTATCCGAGCAAAGCCACCAACTTTTAGAGCAAG
CTATGGACAAATTTGGTTTGTCACACCGAGCTTATCATCGGATCTTAAAATTGGCGCGGACTATTGCTGATTTGGCCAAC
TCAGAACACATAGAAATCAAGCATTTGAGTGAAGCGATTAGCTATCGCAAGCTGGATCGTAGCGTGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.04

100

0.564
  comM Vibrio campbellii strain DS40M4

56.088

99.801

0.56
  comM Glaesserella parasuis strain SC1401

53.082

100

0.532
  comM Haemophilus influenzae Rd KW20

51.786

100

0.52
  comM Legionella pneumophila str. Paris

51.195

100

0.512
  comM Legionella pneumophila strain ERS1305867

51.195

100

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.07

100

0.48