Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JFY28_RS04310 Genome accession   NZ_CP075852
Coordinates   816339..816968 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain S19-651     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 811339..821968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFY28_RS04295 (JFY28_004295) helD 811581..813635 (-) 2055 WP_000420536.1 DNA helicase IV -
  JFY28_RS04300 (JFY28_004300) yccF 813758..814204 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JFY28_RS04305 (JFY28_004305) yccS 814214..816376 (+) 2163 WP_000875020.1 YccS family putative transporter -
  JFY28_RS04310 (JFY28_004310) sxy/tfoX 816339..816968 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JFY28_RS04315 (JFY28_004315) sulA 817187..817696 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JFY28_RS04320 (JFY28_004320) ompA 818053..819093 (+) 1041 WP_000750416.1 porin OmpA -
  JFY28_RS04325 (JFY28_004325) matP 819169..819621 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JFY28_RS04330 (JFY28_004330) ycbZ 819807..821567 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=570320 JFY28_RS04310 WP_000839153.1 816339..816968(-) (sxy/tfoX) [Escherichia coli strain S19-651]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=570320 JFY28_RS04310 WP_000839153.1 816339..816968(-) (sxy/tfoX) [Escherichia coli strain S19-651]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1