Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KJY40_RS29530 Genome accession   NZ_CP075567
Coordinates   6478125..6479618 (+) Length   497 a.a.
NCBI ID   WP_230734204.1    Uniprot ID   -
Organism   Pseudomonas fitomaticsae strain FIT81     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6473125..6484618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJY40_RS29500 (KJY40_29440) glnK 6473500..6473838 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  KJY40_RS29505 (KJY40_29445) - 6474237..6474497 (+) 261 WP_230734195.1 accessory factor UbiK family protein -
  KJY40_RS29510 (KJY40_29450) - 6474898..6475419 (+) 522 WP_230734197.1 Bro-N domain-containing protein -
  KJY40_RS29515 (KJY40_29455) - 6475414..6475683 (-) 270 WP_230734200.1 HigA family addiction module antitoxin -
  KJY40_RS29520 (KJY40_29460) - 6476103..6476276 (+) 174 WP_165369534.1 hypothetical protein -
  KJY40_RS29525 (KJY40_29465) - 6476318..6477934 (+) 1617 WP_230734202.1 anti-phage dCTP deaminase -
  KJY40_RS29530 (KJY40_29470) comM 6478125..6479618 (+) 1494 WP_230734204.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KJY40_RS29535 (KJY40_29475) - 6479896..6481158 (+) 1263 WP_230734206.1 hypothetical protein -
  KJY40_RS29540 (KJY40_29480) - 6481234..6481782 (+) 549 WP_230734208.1 adenylyl-sulfate kinase -
  KJY40_RS29545 (KJY40_29485) - 6481779..6482528 (+) 750 WP_230734211.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53101.27 Da        Isoelectric Point: 8.0954

>NTDB_id=569754 KJY40_RS29530 WP_230734204.1 6478125..6479618(+) (comM) [Pseudomonas fitomaticsae strain FIT81]
MSLAIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRTLVVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPVEPYISDGLIHAAKPYPDLNEVQGQLSAKRALLIAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASGAPLTHWPQRPFRQPHHSASGPALVGGSTKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GWIVIARAKERVRFPARFQLVAAMNPCPCGYLGEPSGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPTMKP
GEDSATAAIQVAEARERQQKRQGCANAFLDLPGLRRHCKLSTTDEHWLESACERLTLSLRSAHRLLKVARTLADIEKVDA
ISREHLAEALQYRPATQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=569754 KJY40_RS29530 WP_230734204.1 6478125..6479618(+) (comM) [Pseudomonas fitomaticsae strain FIT81]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGATAGGCGTGGATGCTCCCGCCGTCACCGTCGAAGTTCACCTGGCCAA
CGGCCTGCCCTCGCTGACCATGGTCGGCCTGCCCGAAGCGGCGGTGAAGGAGAGCAAGGATCGAGTACGAAGCGCGATCA
TCAATTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACGTTGAATCTGGCGCCGGCGGATCTGCCCAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCGCTGGGGATTCTGTCGGCGAGTGTGCAGGTGCCGACGTTGACGCTGGATGACGTGGAATGCCT
CGGTGAGCTGGCGTTATCCGGCGCAGTGCGGGCGGTGCGTGGGGTGTTGCCAGCGGCGCTGGCAGCACGCAAGGCCGGGC
GGACGCTGGTGGTGCCCCGGGCGAATGCCGAGGAAGCGTGCCTGGCATCAGGGCTGAAGGTGATCGCGGTGGATCATCTG
CTGGAGGCAGTGGCGCATTTCAATGGGCATACACCGGTCGAGCCTTATATCTCGGATGGGCTGATCCATGCCGCCAAACC
CTATCCCGACCTGAATGAAGTGCAGGGCCAACTGTCTGCCAAACGGGCGCTGCTGATTGCAGCAGCGGGGGCGCACAACC
TGCTGCTCAGCGGACCACCGGGAACGGGCAAGACATTGCTGGCCAGCCGTTTGCCGGGGTTGCTCCCGCCCTTGGCCGAG
AGTGAAGCGCTGGAAGTTGCAGCCATTCAATCCGTTGCCAGCGGCGCGCCACTGACCCACTGGCCGCAGCGCCCGTTCCG
CCAACCACATCATTCGGCCTCCGGTCCGGCACTGGTCGGTGGCAGTACAAAACCGCAACCCGGCGAAATCACCCTCGCAC
ACCACGGCGTACTGTTCCTCGACGAACTGCCGGAATTTGATCGCAAGGTGCTGGAAGTTCTACGTGAGCCCTTGGAGTCC
GGCTGGATCGTGATTGCCCGGGCCAAGGAGCGAGTGCGGTTTCCCGCAAGATTCCAGCTGGTCGCCGCGATGAATCCCTG
CCCCTGTGGATATCTTGGCGAGCCGAGCGGACGCTGCTCCTGCACCCCGGACATGGTGCAGCGTTATCGCAACAAGTTGT
CGGGGCCGTTGCTGGACCGGATCGATCTGCACCTGACCGTTGCACGGGAGGCCACTGCATTGAACCCGACAATGAAACCC
GGAGAGGACAGCGCCACAGCGGCTATTCAGGTCGCCGAAGCCCGGGAGCGACAGCAAAAACGCCAAGGCTGCGCGAATGC
GTTTCTGGATTTGCCGGGGTTGCGCAGACACTGCAAGTTATCCACAACCGATGAACACTGGCTGGAGTCTGCATGCGAAC
GACTGACACTTTCACTGCGTTCGGCGCATCGCCTGCTCAAGGTTGCACGGACATTGGCCGATATAGAGAAGGTTGATGCC
ATCTCCCGTGAGCACCTGGCCGAAGCGCTTCAGTATCGCCCGGCGACGCAATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.545

99.598

0.543
  comM Vibrio campbellii strain DS40M4

54.141

99.598

0.539
  comM Haemophilus influenzae Rd KW20

53.507

100

0.537
  comM Glaesserella parasuis strain SC1401

52.39

100

0.529
  comM Legionella pneumophila str. Paris

50.201

100

0.503
  comM Legionella pneumophila strain ERS1305867

50.201

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.219

100

0.457