Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KJY40_RS26005 Genome accession   NZ_CP075567
Coordinates   5742935..5744281 (+) Length   448 a.a.
NCBI ID   WP_230733587.1    Uniprot ID   -
Organism   Pseudomonas fitomaticsae strain FIT81     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5737935..5749281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJY40_RS25980 (KJY40_25920) pgeF 5738150..5738872 (-) 723 WP_230733585.1 peptidoglycan editing factor PgeF -
  KJY40_RS25985 (KJY40_25925) rluD 5738869..5739831 (-) 963 WP_085712174.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KJY40_RS25990 (KJY40_25930) - 5739984..5741000 (+) 1017 WP_007959566.1 outer membrane protein assembly factor BamD -
  KJY40_RS25995 (KJY40_25935) - 5741126..5741359 (+) 234 WP_115079251.1 PP0621 family protein -
  KJY40_RS26000 (KJY40_25940) pilS 5741349..5742938 (+) 1590 WP_230737764.1 PAS domain-containing sensor histidine kinase Regulator
  KJY40_RS26005 (KJY40_25945) pilR 5742935..5744281 (+) 1347 WP_230733587.1 sigma-54 dependent transcriptional regulator Regulator
  KJY40_RS26010 (KJY40_25950) thiO 5744341..5745441 (-) 1101 WP_230733589.1 glycine oxidase ThiO -
  KJY40_RS26015 (KJY40_25955) - 5745499..5745900 (-) 402 WP_039771691.1 type IV pilin protein -
  KJY40_RS26020 (KJY40_25960) - 5745916..5749008 (-) 3093 WP_230733591.1 pilus assembly protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50116.44 Da        Isoelectric Point: 6.5961

>NTDB_id=569747 KJY40_RS26005 WP_230733587.1 5742935..5744281(+) (pilR) [Pseudomonas fitomaticsae strain FIT81]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLAEAQTLLYRETFDLCLTDMRLPDGSGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGSALRMPAPGNVCTSIDRRLLGDSPPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVA
DLPLPMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERREDIEALA
GHMLKRLANGTGQPAARLHPHALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLIEGNGTAEGGVADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=569747 KJY40_RS26005 WP_230733587.1 5742935..5744281(+) (pilR) [Pseudomonas fitomaticsae strain FIT81]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATTCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAATCTCGCAGAAGCCCAGACGCTGCTGTACCGCGAGACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCTCCGGCCTGGAGCTGGTGCAGCACATTCAGCAACGTTATCCGCAACTGCCA
GTGGCGATGATCACCGCCTACGGCAGCCTGGAAACGGCGATCAACGCCCTGAAAGCCGGGGCTTTCGACTTCCTGACCAA
ACCGGTGGACCTGACACGCCTGCGCGAGCTGGTCGGCTCGGCGTTGCGCATGCCGGCGCCGGGCAATGTCTGCACCTCGA
TCGATCGGCGATTGCTCGGCGATTCGCCGCCGATGCGCAACCTGCGCAAACAGATCGACAAACTGGCCCGCAGCCAGGCA
CCGGTCTACATCAGCGGCGAATCCGGCAGCGGCAAGGAACTGGTGGCCCGATTGATTCATGAACAGGGCCCGCGTGCCAG
CCAGCCATTCGTGCCGGTGAACTGCGGGGCGATTCCTTCTGAGTTGATGGAGAGCGAGTTCTTCGGCCATCGCAAAGGCA
GTTTCAGCGGTGCGGTGGAAGATAAACCGGGGCTGTTTCAGGCGGCCCATGGCGGCACACTGTTTCTCGATGAAGTGGCG
GATCTACCGCTGCCGATGCAGGTCAAGCTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCAGCGTCGGTGGCCAACAGGA
AACCGTGGTCGATGTGCGCATCCTCTGCGCGACGCACAAGGATCTCGACGCTGAAGTGGCTGCCGAGCGTTTTCGTCAGG
ATCTGTATTACCGGCTGAACGTGATCGAACTGCGCGTACCGTCCCTGCGCGAACGTCGCGAGGACATCGAAGCACTGGCC
GGCCATATGCTCAAGCGCCTGGCCAATGGCACCGGGCAGCCGGCGGCACGCCTTCATCCTCATGCCCTCGAGGCGCTGAA
AAACTACCGTTTTCCGGGCAACGTGCGAGAGCTGGAGAACGTGCTTGAGCGGGCGCATACCCTGTGTGAAAACCGCACGA
TCGAGGCCGAGGATTTACGCCTGATCGAAGGTAATGGCACCGCCGAGGGCGGCGTTGCCGATCTCACGCAGATCGACAAC
CTGGAAGACTATCTGGAAAGCGTCGAGCGCAAACTGATTCTGCAGGCACTGGAAGAAACCCGCTGGAATCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTTAGGTCGATGCGCTACAGGCTCAAGAAACTGGGTCTGGATTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

80.135

98.884

0.792
  pilR Acinetobacter baumannii strain A118

48.478

100

0.498