Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   KJY40_RS26000 Genome accession   NZ_CP075567
Coordinates   5741349..5742938 (+) Length   529 a.a.
NCBI ID   WP_230737764.1    Uniprot ID   -
Organism   Pseudomonas fitomaticsae strain FIT81     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5736349..5747938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJY40_RS25980 (KJY40_25920) pgeF 5738150..5738872 (-) 723 WP_230733585.1 peptidoglycan editing factor PgeF -
  KJY40_RS25985 (KJY40_25925) rluD 5738869..5739831 (-) 963 WP_085712174.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KJY40_RS25990 (KJY40_25930) - 5739984..5741000 (+) 1017 WP_007959566.1 outer membrane protein assembly factor BamD -
  KJY40_RS25995 (KJY40_25935) - 5741126..5741359 (+) 234 WP_115079251.1 PP0621 family protein -
  KJY40_RS26000 (KJY40_25940) pilS 5741349..5742938 (+) 1590 WP_230737764.1 PAS domain-containing sensor histidine kinase Regulator
  KJY40_RS26005 (KJY40_25945) pilR 5742935..5744281 (+) 1347 WP_230733587.1 sigma-54 dependent transcriptional regulator Regulator
  KJY40_RS26010 (KJY40_25950) thiO 5744341..5745441 (-) 1101 WP_230733589.1 glycine oxidase ThiO -
  KJY40_RS26015 (KJY40_25955) - 5745499..5745900 (-) 402 WP_039771691.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58527.37 Da        Isoelectric Point: 6.5047

>NTDB_id=569746 KJY40_RS26000 WP_230737764.1 5741349..5742938(+) (pilS) [Pseudomonas fitomaticsae strain FIT81]
MIAEADNADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDELLRNGSWLYLVLNILLVVFLENIHRPAQLF
GLALVDILLLCSVFYAAGGVASAIGNLLIVSVAISNTLLRRRIGLLIAAIATLGIVGLSFLLSFSHPLSANDYLQAGTLG
ALCFAASLLVQGLMRRLEVSENLAELRASEVVGLEALNALILQRMRTGILVLDEERRVQLANHSAKALLGQTHLEGDLID
EHSSALVERLQLWLNNPTLRPQSLKIAGNGLELQPSFIALEQSPNRQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELDGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEQFVSESREQAGER
QHIHLHIGPGDFRTLMDPGQLTQILDNLLRNGWRHSALLHDPAEVWLTLLIDPESTLAVLEVQDNGPGVPLDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=569746 KJY40_RS26000 WP_230737764.1 5741349..5742938(+) (pilS) [Pseudomonas fitomaticsae strain FIT81]
GTGATCGCTGAGGCCGACAACGCCGACAGCAAACAGGCCCAGCGACTGCTGCGCCTCTATCATCTGTACCGCTTGAGTGT
CGGCATCACCCTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACCTCGGCCAACGACGAGTTGCTGCGCA
ATGGCAGCTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTGTTCCTCGAGAACATCCACCGCCCGGCCCAGTTGTTC
GGCCTGGCACTGGTCGACATCCTGCTGCTGTGCAGCGTGTTCTACGCGGCCGGCGGCGTGGCCAGCGCGATCGGCAACCT
GCTGATCGTTTCGGTGGCCATCAGCAACACCTTGCTGCGACGACGCATCGGCTTGCTGATCGCCGCCATCGCTACCCTCG
GCATCGTCGGGCTCAGCTTTCTGCTGAGTTTCAGCCATCCCTTGAGCGCCAACGACTATCTTCAGGCTGGCACCCTCGGT
GCCTTGTGCTTTGCCGCCTCGCTGCTGGTGCAGGGATTGATGCGCCGTCTCGAAGTCAGTGAGAACCTGGCCGAGCTGCG
TGCCAGCGAAGTCGTGGGGCTCGAAGCCCTCAACGCGCTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTCGACG
AAGAGCGCCGGGTGCAACTGGCCAACCACAGCGCCAAGGCCCTGCTGGGTCAAACGCACCTTGAAGGCGACCTGATCGAC
GAGCACTCGAGCGCATTGGTCGAACGCCTGCAACTGTGGCTGAACAACCCGACCCTGCGCCCGCAAAGCCTGAAAATCGC
CGGCAACGGCCTGGAGCTGCAACCGAGCTTCATCGCCCTGGAACAGAGCCCGAACCGCCAAACCCTGGTGTTTCTCGAAG
ACCTCGCCCAGATCGCCCAGCAGGCCCAACAATTGAAACTGGCCGCGCTGGGCCGACTGACCGCCGGTATCGCCCATGAA
ATCCGCAATCCGCTGGGCGCCATCAGTCATGCCGCGCAGCTGTTGCAGGAATCCGAGGAACTCGACGGCGCGGATCGGCG
TCTGACACAGATCATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AGAGCGCGCCGCAACGGCTGGATCTCAAGCCGTGGCTGGAACAGTTCGTCAGCGAAAGCCGCGAACAGGCCGGCGAGCGC
CAGCACATTCATCTGCACATCGGCCCGGGGGATTTCCGCACGTTGATGGATCCCGGCCAGCTCACACAGATTCTCGACAA
TCTGTTACGCAACGGCTGGCGCCACAGTGCCCTGTTGCACGATCCGGCCGAGGTCTGGCTGACGCTGTTGATCGACCCCG
AAAGCACGCTGGCCGTGCTCGAAGTGCAGGACAACGGCCCCGGCGTGCCGCTGGATCAGCAGGCTCACCTGTTCGAACCG
TTCTTTACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAAGCGCGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAATTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.227

99.811

0.601