Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   KIK01_RS07040 Genome accession   NZ_CP075489
Coordinates   1386445..1386744 (-) Length   99 a.a.
NCBI ID   WP_076645268.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain ob4.1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1381445..1391744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIK01_RS07005 (KIK01_07005) - 1382076..1382534 (-) 459 WP_025016390.1 hypothetical protein -
  KIK01_RS07010 (KIK01_07010) - 1382589..1383785 (-) 1197 WP_025016389.1 acetate kinase -
  KIK01_RS07015 (KIK01_07015) - 1383807..1384817 (-) 1011 WP_025016388.1 class I SAM-dependent methyltransferase -
  KIK01_RS07020 (KIK01_07020) - 1384941..1385279 (-) 339 WP_056947123.1 hypothetical protein -
  KIK01_RS07025 (KIK01_07025) comGF 1385242..1385754 (-) 513 WP_025016386.1 competence type IV pilus minor pilin ComGF Machinery gene
  KIK01_RS07030 (KIK01_07030) comGE 1385729..1386034 (-) 306 WP_025016385.1 hypothetical protein Machinery gene
  KIK01_RS07035 (KIK01_07035) comGD 1386021..1386473 (-) 453 WP_213923248.1 competence type IV pilus minor pilin ComGD Machinery gene
  KIK01_RS07040 (KIK01_07040) comGC 1386445..1386744 (-) 300 WP_076645268.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  KIK01_RS07045 (KIK01_07045) comGB 1386741..1387748 (-) 1008 WP_076648212.1 type II secretion system F family protein Machinery gene
  KIK01_RS07050 (KIK01_07050) comGA 1387741..1388631 (-) 891 WP_076648214.1 competence type IV pilus ATPase ComGA Machinery gene
  KIK01_RS07055 (KIK01_07055) - 1388746..1389477 (-) 732 WP_011375002.1 YebC/PmpR family DNA-binding transcriptional regulator -
  KIK01_RS07060 (KIK01_07060) - 1389568..1390068 (-) 501 WP_099960320.1 VanZ family protein -
  KIK01_RS07065 (KIK01_07065) - 1390165..1390539 (+) 375 WP_213923249.1 hypothetical protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10980.93 Da        Isoelectric Point: 9.9124

>NTDB_id=569323 KIK01_RS07040 WP_076645268.1 1386445..1386744(-) (comGC) [Latilactobacillus sakei subsp. sakei strain ob4.1]
MKKKRNAFTLIEMVVVLAIIALLILLVAPNLGAQKQRAEKKTDQALVTTLQTQVELASDEIGHEIKSLDELTDKYISKDQ
LKHAKEKGITIEGGTVKQK

Nucleotide


Download         Length: 300 bp        

>NTDB_id=569323 KIK01_RS07040 WP_076645268.1 1386445..1386744(-) (comGC) [Latilactobacillus sakei subsp. sakei strain ob4.1]
ATGAAGAAAAAAAGAAATGCTTTTACACTAATCGAAATGGTAGTTGTTCTTGCCATTATTGCGTTGTTAATCTTATTAGT
TGCACCAAACCTAGGTGCTCAAAAACAGCGCGCGGAGAAGAAAACGGATCAAGCTTTGGTGACGACTTTACAAACGCAAG
TTGAATTAGCTAGCGACGAGATTGGTCATGAAATCAAGAGTTTAGATGAGCTAACGGATAAGTATATTTCAAAAGATCAG
TTAAAGCACGCAAAGGAGAAGGGGATTACAATTGAAGGCGGCACGGTTAAGCAAAAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Latilactobacillus sakei subsp. sakei 23K

97.98

100

0.98
  comGC/cglC Streptococcus pneumoniae TIGR4

45.349

86.869

0.394
  comGC/cglC Streptococcus pneumoniae Rx1

45.349

86.869

0.394
  comGC/cglC Streptococcus pneumoniae D39

45.349

86.869

0.394
  comGC/cglC Streptococcus pneumoniae R6

45.349

86.869

0.394
  comGC/cglC Streptococcus mitis NCTC 12261

44.186

86.869

0.384
  comGC/cglC Streptococcus mitis SK321

43.023

86.869

0.374