Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   KIP84_RS17710 Genome accession   NZ_CP075323
Coordinates   3689123..3690256 (+) Length   377 a.a.
NCBI ID   WP_213689004.1    Uniprot ID   -
Organism   Acinetobacter sp. BHS4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3684123..3695256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP84_RS17685 (KIP84_17690) - 3684415..3684621 (-) 207 WP_005072046.1 hypothetical protein -
  KIP84_RS17690 (KIP84_17695) - 3684671..3686752 (-) 2082 WP_213689002.1 TonB-dependent copper receptor -
  KIP84_RS17695 (KIP84_17700) - 3686825..3687250 (-) 426 WP_002114087.1 DUF2946 family protein -
  KIP84_RS17700 (KIP84_17705) def 3687294..3687824 (-) 531 WP_032055797.1 peptide deformylase -
  KIP84_RS17705 (KIP84_17710) tsaP 3687948..3689102 (+) 1155 WP_213689003.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  KIP84_RS17710 (KIP84_17715) dprA 3689123..3690256 (+) 1134 WP_213689004.1 DNA-processing protein DprA Machinery gene
  KIP84_RS17715 (KIP84_17720) - 3690308..3690877 (+) 570 WP_213689005.1 Sua5/YciO/YrdC/YwlC family protein -
  KIP84_RS17720 (KIP84_17725) - 3691270..3692190 (-) 921 WP_213689006.1 DMT family transporter -
  KIP84_RS17725 (KIP84_17730) - 3692294..3692947 (-) 654 WP_213689007.1 TetR/AcrR family transcriptional regulator -
  KIP84_RS17730 (KIP84_17735) - 3693083..3694297 (+) 1215 WP_213689008.1 MFS transporter -
  KIP84_RS17735 (KIP84_17740) - 3694319..3695083 (+) 765 WP_032063704.1 helix-turn-helix transcriptional regulator -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41834.29 Da        Isoelectric Point: 6.6671

>NTDB_id=568793 KIP84_RS17710 WP_213689004.1 3689123..3690256(+) (dprA) [Acinetobacter sp. BHS4]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIVDYFGSCEKAVQPAGLSQWRNLGLHANHLKRVDEFRTAQGQAQFERLTEQI
QQHTDFILTADDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQNSTEEAVVSSTPEI
PDHLINLYQSLDWVGQNIDQLVLHHSQPVAELTSSLMELELLGLSMQQSGLYLRCRS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=568793 KIP84_RS17710 WP_213689004.1 3689123..3690256(+) (dprA) [Acinetobacter sp. BHS4]
ATGCTTACTCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAACACTCTTTAGTCAGCTTTAA
AAAAATTGTCGATTATTTTGGTAGCTGTGAAAAGGCGGTCCAACCTGCTGGATTATCTCAATGGCGCAATCTCGGGTTAC
ATGCTAATCATTTAAAACGCGTAGATGAATTTCGAACTGCTCAGGGTCAAGCTCAGTTTGAAAGACTAACTGAGCAAATC
CAGCAACATACCGACTTTATTTTAACGGCAGATGACTCAGGCTATCCCACTCAGTTATTACCTTATACAGATCACCCACC
TATCATTTTTGGAAAAGGTCAGGCACAAGCCTTATTACAACCACAAATTGCGATTGTAGGTAGCCGAAAACCAAGCCCAC
ATGGTCGTCAGGTTGCTTATGATTTTGCCTATTACTTAAGTGAAAAAGGTTTTTATGTAAGTAGTGGCTTGGCATATGGC
ATTGATGAAGCTGCTCACCAAGGAGCATCAGCACATCAACGTACAATTGCAGTAACAGGAACTGGTTTAGACAGTACCTA
CCCTGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAATGGCGCGATTATTACTGAATTTTTGCCTGGAACAC
CCCCATTACAACAGCATTTCCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTGTTAGTGGTAGAAGCTACC
TTAAAAAGTGGTTCTCTCATCACTGCGAACAAAGCTGCCGAACAAGGTAAGACTGTATTTGCCATTCCTGGTCATATTTA
CAGTGAGTTTCATCAAGGTTGCCATCAACTTATTCGTGAAGGAGCAATTTTAGTCGATCATCCTGAACAAATTATTGAAG
ACCTTGCTTTACCCACCCAGTGGCAAAGTCAGCAACAAAACTCCACCGAGGAGGCTGTAGTTTCTAGTACTCCAGAAATT
CCTGACCATTTAATTAACCTTTATCAATCTTTAGACTGGGTTGGACAAAATATTGATCAGCTTGTCTTACATCACTCTCA
GCCTGTTGCAGAACTCACCTCTTCACTGATGGAACTAGAACTACTTGGTTTATCTATGCAACAATCAGGATTGTATTTAC
GTTGTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

90.716

100

0.907

  dprA Acinetobacter baumannii strain A118

90.186

100

0.902

  dprA Acinetobacter baylyi ADP1

71.129

100

0.719

  dprA Vibrio cholerae strain A1552

43.844

88.329

0.387