Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   KIP84_RS17705 Genome accession   NZ_CP075323
Coordinates   3687948..3689102 (+) Length   384 a.a.
NCBI ID   WP_213689003.1    Uniprot ID   -
Organism   Acinetobacter sp. BHS4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3682948..3694102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP84_RS17680 (KIP84_17685) - 3683133..3684347 (+) 1215 WP_213689001.1 oxygenase MpaB family protein -
  KIP84_RS17685 (KIP84_17690) - 3684415..3684621 (-) 207 WP_005072046.1 hypothetical protein -
  KIP84_RS17690 (KIP84_17695) - 3684671..3686752 (-) 2082 WP_213689002.1 TonB-dependent copper receptor -
  KIP84_RS17695 (KIP84_17700) - 3686825..3687250 (-) 426 WP_002114087.1 DUF2946 family protein -
  KIP84_RS17700 (KIP84_17705) def 3687294..3687824 (-) 531 WP_032055797.1 peptide deformylase -
  KIP84_RS17705 (KIP84_17710) tsaP 3687948..3689102 (+) 1155 WP_213689003.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  KIP84_RS17710 (KIP84_17715) dprA 3689123..3690256 (+) 1134 WP_213689004.1 DNA-processing protein DprA Machinery gene
  KIP84_RS17715 (KIP84_17720) - 3690308..3690877 (+) 570 WP_213689005.1 Sua5/YciO/YrdC/YwlC family protein -
  KIP84_RS17720 (KIP84_17725) - 3691270..3692190 (-) 921 WP_213689006.1 DMT family transporter -
  KIP84_RS17725 (KIP84_17730) - 3692294..3692947 (-) 654 WP_213689007.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42576.42 Da        Isoelectric Point: 7.2977

>NTDB_id=568792 KIP84_RS17705 WP_213689003.1 3687948..3689102(+) (tsaP) [Acinetobacter sp. BHS4]
MKKVFDGMVQFHALGIKKHLLAFALFTGVAFGTVAEVYAASPNHNPPSLKSNAPHVYVVKRGDTLWDISGHFLSKPWRWP
EIWANNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQMTNLQPQVRVESLNNNVPVIPLEHIKQWLE
HSTILPADAIEHTPYVVGTADQRVLAAKGQTIYARGQGLIDGQRYAVYREGEPYYFTDNKGKKHSLGIELQQVASGIAIS
SEKDITTLELTDSYNSEVRRGDRVMPEEDATLPTLFYPVDATQVPDGGKIIRVMGSIGTAAKNSVVTLDRGTTQGVQVGQ
VFDITQQGETIRDPKTKESIKLPGQQIGSLMVFRTFDQLSYAYVLESDLPVKVGSSIQPPRFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=568792 KIP84_RS17705 WP_213689003.1 3687948..3689102(+) (tsaP) [Acinetobacter sp. BHS4]
ATGAAAAAGGTTTTTGACGGCATGGTTCAATTTCATGCTTTGGGGATAAAAAAGCATTTACTTGCTTTCGCACTTTTTAC
AGGGGTTGCTTTCGGTACGGTAGCAGAGGTTTATGCTGCTAGTCCAAACCATAATCCACCCTCTCTTAAAAGTAATGCAC
CACATGTCTACGTAGTAAAACGAGGAGATACGCTATGGGATATTTCCGGTCACTTTCTGAGTAAACCTTGGCGCTGGCCT
GAAATTTGGGCAAATAATCAGCATGTTAAAAATCCGCATTGGATTTATCCAGGTGATCGATTACTGCTGTGTAGTTTAGA
TGGCCGTCCATTGGTTGGAAAAGATGAGGGAGATGGCTGTGTCGGCATTATTCGCCGTTACACAGGCCAAATGACAAATT
TACAACCTCAAGTTCGTGTGGAATCACTTAACAATAACGTACCTGTTATTCCTCTTGAGCATATCAAACAATGGTTAGAA
CACAGCACAATTTTGCCAGCCGACGCAATTGAACACACTCCTTATGTAGTCGGTACTGCCGATCAACGTGTACTTGCAGC
AAAAGGTCAAACTATTTATGCGCGCGGACAAGGTTTGATTGATGGTCAACGTTATGCAGTTTATCGTGAAGGTGAACCTT
ATTATTTCACCGATAATAAAGGCAAAAAGCACAGTCTAGGTATTGAGCTACAACAAGTTGCCTCAGGGATTGCGATCTCT
TCTGAAAAAGACATTACCACGCTTGAGTTAACTGATAGCTACAATTCTGAAGTACGTCGTGGTGATCGGGTGATGCCAGA
AGAAGATGCCACATTGCCTACTTTATTTTATCCAGTGGACGCTACTCAAGTGCCAGATGGCGGCAAAATCATTCGTGTAA
TGGGATCAATTGGCACTGCTGCCAAAAATAGTGTGGTGACTTTGGACCGAGGCACAACTCAAGGAGTTCAAGTAGGCCAA
GTTTTTGATATTACGCAGCAAGGCGAAACCATTCGAGATCCTAAAACCAAGGAATCAATAAAGTTACCAGGACAACAAAT
TGGTAGTCTGATGGTCTTTAGAACTTTTGATCAGTTGAGTTATGCCTACGTATTAGAAAGCGATTTACCAGTTAAAGTTG
GTTCAAGCATTCAGCCACCCCGCTTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

90.365

100

0.904