Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KI617_RS00275 Genome accession   NZ_CP075191
Coordinates   64574..66070 (-) Length   498 a.a.
NCBI ID   WP_226449571.1    Uniprot ID   -
Organism   Ferribacterium limneticum strain 128     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 59574..71070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI617_RS00260 (KI617_00260) bamE 62423..62917 (-) 495 WP_226449566.1 outer membrane protein assembly factor BamE -
  KI617_RS00265 (KI617_00265) - 63007..63399 (+) 393 WP_226449567.1 rhodanese-like domain-containing protein -
  KI617_RS00270 (KI617_00270) - 63379..64581 (-) 1203 WP_226449569.1 multidrug effflux MFS transporter -
  KI617_RS00275 (KI617_00275) comM 64574..66070 (-) 1497 WP_226449571.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KI617_RS00280 (KI617_00280) - 66077..66319 (-) 243 WP_226449573.1 accessory factor UbiK family protein -
  KI617_RS00285 (KI617_00285) - 66558..67334 (+) 777 WP_226449575.1 TorF family putative porin -
  KI617_RS00290 (KI617_00290) glnK 67420..67758 (+) 339 WP_027456934.1 P-II family nitrogen regulator -
  KI617_RS00295 (KI617_00295) - 67769..69271 (+) 1503 WP_226449577.1 ammonium transporter -
  KI617_RS00300 (KI617_00300) - 69384..69926 (-) 543 WP_226449579.1 hydrolase -
  KI617_RS00305 (KI617_00305) purU 69926..70789 (-) 864 WP_226449581.1 formyltetrahydrofolate deformylase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53072.62 Da        Isoelectric Point: 7.3369

>NTDB_id=568567 KI617_RS00275 WP_226449571.1 64574..66070(-) (comM) [Ferribacterium limneticum strain 128]
MALAIAHSRGLDGLNAPPVIVEAHLASGLPSFTLVGLPDTEVKEARDRVRAAIINSGFEFPSKRITVNLAPADLPKESGR
FDLPIALGILAASGQIPTPPLADYEFAGELSLSGELRPIRGALAMALQTSDNGKAFILPEASAQEAALTGSTHILSARSL
LDVCAHLADREALPPAIASVNTENWPKFPDLAEVRGQTQAKRALEIAAAGNHSLLMVGPPGSGKSMLAARLPGLMPALEG
EAAKASAAVLSLVGQFRPETFGVRPYRQPHHTASAVALVGGGNPPRPGEISLAHQGILFLDELPEFDRKVLETLREPLES
GRIHIARAARHAEFPAEFQLIAAMNPCPCGFLGHGNNKCRCTPDQIARYRGKLSGPFLDRIDLIIEVPALPSDALAGKAD
GESSETVRARVEQAQARQQARQHKPNARLSTKEVDASCQPDETGSKLLQQATTQLDLSARAWHRILKVARTIADLAGSDD
IRAPHIAEAIQYRRFARG

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=568567 KI617_RS00275 WP_226449571.1 64574..66070(-) (comM) [Ferribacterium limneticum strain 128]
ATGGCGCTGGCCATCGCACACAGCCGTGGGCTGGATGGCCTGAACGCGCCACCGGTCATTGTCGAGGCGCACCTCGCCAG
CGGCTTGCCCAGTTTCACACTGGTTGGCTTGCCTGACACGGAAGTCAAGGAAGCGCGTGACCGCGTCCGCGCGGCCATCA
TCAATTCCGGCTTTGAATTTCCCAGCAAGCGGATCACCGTCAATCTGGCGCCGGCCGATCTGCCCAAGGAGTCCGGCCGC
TTCGATCTGCCGATCGCGCTCGGCATTCTCGCCGCCAGCGGCCAGATTCCGACGCCACCGCTGGCCGACTACGAATTTGC
CGGGGAACTCTCGCTTTCGGGCGAACTGCGCCCGATTCGCGGTGCGCTGGCCATGGCACTGCAAACCAGCGACAACGGCA
AGGCCTTCATCCTGCCCGAAGCCAGCGCCCAGGAAGCCGCGCTGACCGGCTCGACTCACATTCTGTCAGCCCGTTCGCTG
CTTGATGTCTGTGCCCATCTGGCTGATCGCGAGGCACTGCCGCCAGCGATTGCCTCGGTCAATACTGAAAACTGGCCGAA
ATTTCCCGACCTCGCCGAGGTTCGCGGCCAGACCCAGGCCAAGCGGGCGCTGGAAATCGCCGCGGCCGGCAACCACTCCT
TACTAATGGTCGGCCCGCCCGGTTCGGGCAAATCGATGCTCGCCGCCCGCTTGCCCGGCCTGATGCCCGCCCTCGAAGGC
GAGGCGGCCAAGGCCTCGGCGGCTGTCCTGTCGCTGGTCGGGCAATTTCGACCAGAAACCTTCGGCGTTCGCCCTTACCG
TCAACCGCACCACACCGCTTCGGCAGTGGCCCTCGTTGGCGGCGGTAATCCGCCTCGACCCGGCGAAATCAGTTTGGCCC
ATCAGGGCATCCTTTTCCTCGATGAACTGCCCGAATTCGATCGCAAGGTACTCGAAACGCTGCGCGAGCCGCTCGAATCT
GGCCGTATCCATATTGCCCGGGCAGCTCGCCATGCCGAGTTTCCGGCCGAATTCCAATTGATTGCCGCAATGAATCCCTG
CCCTTGCGGATTTTTGGGACACGGCAATAACAAATGCCGGTGCACACCGGACCAGATCGCCCGCTATCGCGGCAAACTGT
CCGGGCCCTTCCTCGATCGCATCGACCTGATCATCGAAGTCCCGGCGCTACCGTCCGACGCCCTCGCCGGCAAGGCCGAT
GGTGAATCGTCTGAGACCGTCCGCGCCCGTGTCGAACAGGCCCAGGCCCGGCAACAGGCTCGCCAGCACAAGCCGAATGC
CCGCCTGAGCACCAAGGAAGTCGATGCCAGCTGCCAGCCCGACGAAACCGGCAGCAAGCTGTTGCAGCAGGCGACAACGC
AGCTCGATCTGTCGGCCCGCGCCTGGCATCGCATCCTGAAAGTCGCCCGGACCATTGCCGATCTGGCCGGCAGCGACGAC
ATCCGCGCGCCCCACATCGCCGAAGCCATCCAGTACCGGCGCTTCGCCCGTGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.309

100

0.544
  comM Vibrio campbellii strain DS40M4

53.707

100

0.538
  comM Glaesserella parasuis strain SC1401

52.883

100

0.534
  comM Haemophilus influenzae Rd KW20

51.389

100

0.52
  comM Legionella pneumophila str. Paris

50

100

0.504
  comM Legionella pneumophila strain ERS1305867

50

100

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.866

100

0.468