Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KI612_RS00220 Genome accession   NZ_CP075188
Coordinates   51853..53346 (-) Length   497 a.a.
NCBI ID   WP_226441819.1    Uniprot ID   -
Organism   Quatrionicoccus australiensis strain D9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 46853..58346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI612_RS00210 (KI612_00210) bamE 50173..50667 (-) 495 WP_226441817.1 outer membrane protein assembly factor BamE -
  KI612_RS00215 (KI612_00215) - 50664..51860 (-) 1197 WP_226441818.1 multidrug effflux MFS transporter -
  KI612_RS00220 (KI612_00220) comM 51853..53346 (-) 1494 WP_226441819.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KI612_RS00225 (KI612_00225) - 53350..53589 (-) 240 WP_226441820.1 accessory factor UbiK family protein -
  KI612_RS00230 (KI612_00230) - 53836..54618 (+) 783 WP_226441821.1 TorF family putative porin -
  KI612_RS00235 (KI612_00235) glnK 54701..55039 (+) 339 WP_226441822.1 P-II family nitrogen regulator -
  KI612_RS00240 (KI612_00240) - 55052..56542 (+) 1491 WP_226441823.1 ammonium transporter -
  KI612_RS00245 (KI612_00245) - 56706..57248 (-) 543 WP_226441824.1 hydrolase -
  KI612_RS00250 (KI612_00250) purU 57253..58116 (-) 864 WP_226441825.1 formyltetrahydrofolate deformylase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52708.48 Da        Isoelectric Point: 7.4243

>NTDB_id=568498 KI612_RS00220 WP_226441819.1 51853..53346(-) (comM) [Quatrionicoccus australiensis strain D9]
MALAVAHSRGLDGLNAPPVLVEVHIASGLPSFTLVGLPDTEVKEARDRVRAAILNSGFEFPAKRITVNLAPADLPKESGR
FDLPIALGILAASGQAPAKVLADHEFAGELSLSGELRPIRGALAMALQTAGNGKAFILPEASAREAALTGADNILAANSL
LEVCAHLAGQQMLAAAPAVDSEKPPVFPDLAEVRGQHQAKRALEVAAAGGHSLMMIGPPGSGKSMLAARLPGLMPPLEIE
AARASAAVLSLAGQFRPESFGIRPYRQPHHTASAVALVGGGNPPRPGEISLAHQGILFLDEIPEFDRKVLETLREPLETG
RIHIARAARHAEFPAEFQLVAAMNPCPCGFHGHSNGKCRCTPDQIARYKGRLSGPFLDRIDILIEVPALPAEALSGKSDG
ETSASVRQRVEPAATRQYERQHKPNARLTAGEVEVHCVPDDAGSNLLKQAITRLDLSARAWHRILKVARTIADLAGSERI
LAPHVGEAIQYRRLTHD

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=568498 KI612_RS00220 WP_226441819.1 51853..53346(-) (comM) [Quatrionicoccus australiensis strain D9]
ATGGCACTGGCCGTCGCTCACAGTCGCGGACTTGACGGCCTCAACGCACCTCCGGTTCTGGTCGAGGTGCATATTGCCAG
CGGCCTGCCCAGCTTCACGCTGGTCGGCCTGCCCGATACCGAAGTCAAGGAAGCGCGCGACCGCGTGCGCGCCGCCATTC
TCAATTCTGGCTTCGAGTTTCCCGCCAAGCGCATCACTGTCAATCTCGCACCAGCCGACCTGCCCAAGGAGTCCGGGCGT
TTCGACCTGCCGATCGCACTGGGCATTCTCGCGGCAAGCGGTCAAGCCCCCGCCAAGGTACTGGCCGATCATGAGTTTGC
CGGCGAGTTGTCGCTCTCCGGCGAACTGCGTCCGATTCGCGGCGCGCTGGCCATGGCCCTGCAGACCGCCGGCAATGGCA
AGGCTTTCATCCTGCCCGAGGCAAGCGCCCGGGAAGCAGCCCTGACCGGGGCCGACAATATTCTTGCCGCCAACTCCCTG
CTCGAAGTCTGTGCCCATCTGGCCGGGCAGCAAATGCTCGCGGCAGCACCAGCGGTCGACAGTGAAAAACCGCCGGTTTT
CCCCGACCTTGCCGAGGTCCGCGGCCAACATCAGGCCAAGCGCGCGCTCGAAGTTGCGGCGGCCGGCGGCCATTCCCTGA
TGATGATCGGCCCGCCCGGCTCCGGCAAATCCATGCTCGCGGCCCGCCTGCCCGGCCTGATGCCGCCGCTGGAGATTGAA
GCGGCACGCGCTTCGGCGGCCGTGCTGTCGCTGGCCGGGCAGTTTCGCCCCGAATCGTTCGGCATCCGGCCCTATCGCCA
GCCGCACCACACCGCCTCGGCCGTCGCGCTGGTCGGTGGCGGCAATCCGCCGCGTCCGGGTGAAATCAGCCTGGCGCACC
AGGGCATTCTCTTCCTTGACGAGATCCCGGAATTCGACCGAAAAGTGCTGGAAACCCTGCGTGAACCGCTGGAAACCGGC
CGCATCCATATTGCCAGAGCTGCCCGTCATGCCGAATTTCCGGCCGAATTCCAGCTGGTCGCCGCAATGAATCCATGTCC
TTGCGGCTTTCATGGCCACAGCAATGGCAAATGCCGCTGCACGCCCGACCAGATTGCCCGCTACAAAGGCCGTCTGTCCG
GACCTTTCCTGGATCGCATCGACATCCTGATCGAAGTCCCGGCCCTGCCGGCCGAGGCGCTGAGCGGCAAGAGCGATGGC
GAAACATCGGCCAGCGTACGCCAGCGGGTCGAACCGGCGGCCACCCGGCAATACGAGCGCCAGCACAAACCGAATGCCCG
GCTCACGGCCGGCGAGGTCGAAGTGCACTGCGTGCCGGACGACGCCGGCAGCAATCTGCTCAAGCAGGCGATTACCCGCC
TCGATCTCTCTGCGCGTGCCTGGCACCGCATTCTCAAGGTCGCCCGCACCATTGCCGATCTGGCCGGCAGCGAACGAATC
CTCGCCCCGCATGTCGGAGAAGCCATTCAGTATCGGCGTCTCACCCATGACTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.93

100

0.549
  comM Vibrio campbellii strain DS40M4

53.333

99.598

0.531
  comM Haemophilus influenzae Rd KW20

51.303

100

0.515
  comM Glaesserella parasuis strain SC1401

51.2

100

0.515
  comM Legionella pneumophila str. Paris

49.602

100

0.501
  comM Legionella pneumophila strain ERS1305867

49.602

100

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.759

100

0.467