NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	KI614_RS00220	Genome accession	NZ_CP075187
Coordinates	55961..57451 (-)	Length	496 a.a.
NCBI ID	WP_226407066.1	Uniprot ID	-
Organism	Dechloromonas denitrificans strain 98
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 50961..62451

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KI614_RS00205 (KI614_00205)	-	53814..54308 (-)	495	WP_226407062.1	outer membrane protein assembly factor BamE	-
KI614_RS00210 (KI614_00210)	-	54397..54789 (+)	393	WP_226407063.1	rhodanese-like domain-containing protein	-
KI614_RS00215 (KI614_00215)	-	54769..55968 (-)	1200	WP_226407064.1	multidrug effflux MFS transporter	-
KI614_RS00220 (KI614_00220)	comM	55961..57451 (-)	1491	WP_226407066.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
KI614_RS00225 (KI614_00225)	-	57457..57699 (-)	243	WP_203468123.1	accessory factor UbiK family protein	-
KI614_RS00230 (KI614_00230)	-	57943..58713 (+)	771	WP_203468124.1	TorF family putative porin	-
KI614_RS00235 (KI614_00235)	glnK	58799..59137 (+)	339	WP_119489942.1	P-II family nitrogen regulator	-
KI614_RS00240 (KI614_00240)	-	59148..60632 (+)	1485	WP_226407068.1	ammonium transporter	-
KI614_RS00245 (KI614_00245)	-	60735..61304 (-)	570	WP_226407070.1	hydrolase	-
KI614_RS00250 (KI614_00250)	purU	61304..62167 (-)	864	WP_226407072.1	formyltetrahydrofolate deformylase	-

Sequence

Protein

Download Length: 496 a.a. Molecular weight: 52676.30 Da Isoelectric Point: 7.9999

                                >NTDB_id=568476 KI614_RS00220 WP_226407066.1 55961..57451(-) (comM) [Dechloromonas denitrificans strain 98]

MALAVAHSRGLDGLNAPPVIVEVHLASGLPSFALVGLPDTEVKEARDRVRAAIVNSGFEFPGKRITVNLAPADLPKESGR

FDLPIALGILAASGQIPARALADYEFAGELSLSGELRPVRGALAMALQTGQGKAFILPESSAHEAALTGSDHIFAARSLL

EVCAHLGGQQALPRAVAVDDRKAPVFPDLSEVRGQTQAKRVLEIAAAGNHSLLMIGPPGSGKSMLAARLPGLMPALDPDA

ARSSAAVLSLTGLFRPENFGVRPYRQPHHTASAVALVGGGNPPRPGEISLAHQGVLFLDELVEFDRKVLETLREPLESGR

VHIARAARHAEFPAEFQLIGAMNPCPCGFHGDSQGKCRCTPDQIARYRGKLSGPFLDRIDLLIEVPALPADTLAEQAAGE

ASATVRARVETAQARQRARQHKPNARLSAAEVDQCCSPDEAGKQLLKQATTRLNLSARAWHRILKVARTIADLAASQDIT

AAHIAEAIQYRRLAHD

Nucleotide

Download Length: 1491 bp

                                >NTDB_id=568476 KI614_RS00220 WP_226407066.1 55961..57451(-) (comM) [Dechloromonas denitrificans strain 98]

ATGGCGCTAGCCGTCGCTCACAGCCGAGGGCTTGACGGTCTCAACGCCCCGCCGGTCATCGTCGAGGTTCATCTGGCCAG

TGGCCTGCCCAGTTTTGCACTGGTCGGTCTGCCGGATACCGAAGTCAAGGAAGCGCGCGACCGCGTGCGCGCAGCCATCG

TCAATTCCGGCTTTGAATTCCCGGGCAAGCGCATCACGGTCAACCTTGCCCCGGCCGATTTACCGAAAGAGTCGGGCCGT

TTCGATCTGCCGATCGCCCTCGGTATCCTTGCTGCCAGCGGCCAGATTCCGGCCCGCGCACTGGCTGATTACGAATTTGC

CGGCGAACTGTCTCTTTCCGGTGAATTACGTCCGGTTCGCGGCGCACTGGCCATGGCGCTCCAGACAGGCCAGGGCAAGG

CCTTCATCCTGCCCGAAAGCAGCGCCCACGAAGCCGCCCTGACCGGGAGCGATCATATTTTTGCTGCCCGCTCCCTGCTT

GAAGTCTGCGCACACCTGGGCGGCCAGCAGGCTTTGCCCCGAGCTGTCGCGGTCGACGACAGAAAAGCGCCTGTTTTCCC

CGATTTGAGTGAAGTACGCGGTCAGACACAAGCCAAACGTGTGCTGGAAATCGCTGCCGCTGGAAATCACTCGCTACTGA

TGATCGGTCCGCCTGGCTCAGGAAAATCGATGCTTGCGGCCCGCCTGCCCGGCCTGATGCCGGCCCTCGATCCCGATGCG

GCCCGCAGTTCGGCAGCCGTGCTGTCCCTCACCGGCCTGTTTCGACCAGAAAATTTCGGCGTCCGCCCCTATCGCCAGCC

CCATCACACGGCATCTGCTGTTGCGCTGGTTGGCGGCGGCAACCCACCTCGCCCGGGTGAAATCAGCCTGGCGCATCAGG

GCGTGCTTTTTCTCGACGAATTGGTCGAATTTGATCGCAAGGTCCTCGAAACCCTGCGCGAACCGCTTGAGTCCGGCCGG

GTGCACATTGCTCGTGCCGCCCGGCATGCTGAATTCCCTGCCGAGTTTCAGCTGATCGGGGCAATGAATCCGTGTCCATG

CGGCTTCCACGGTGACAGCCAGGGAAAATGCCGGTGCACTCCCGACCAGATCGCCCGTTACCGCGGCAAGCTTTCCGGCC

CGTTTCTCGACCGCATCGATCTGCTCATCGAAGTCCCCGCCCTGCCGGCCGACACGCTGGCCGAACAAGCCGCAGGAGAA

GCATCGGCGACAGTTCGGGCGCGCGTTGAAACAGCGCAGGCCCGACAACGGGCTCGCCAGCACAAACCGAATGCCCGCCT

GAGTGCGGCTGAAGTCGATCAGTGCTGCAGTCCCGATGAAGCCGGAAAACAGCTCCTCAAACAAGCTACCACCCGGCTCA

ATCTGTCGGCCCGCGCCTGGCACCGCATTCTCAAGGTTGCACGCACCATCGCCGATCTGGCCGCCAGCCAGGACATCACC

GCCGCGCATATTGCCGAAGCCATCCAGTACCGCCGCCTTGCCCATGACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	55.2	100	0.556
comM	Vibrio campbellii strain DS40M4	53.737	99.798	0.536
comM	Haemophilus influenzae Rd KW20	50.701	100	0.51
comM	Glaesserella parasuis strain SC1401	50.501	100	0.508
comM	Legionella pneumophila str. Paris	49.801	100	0.504
comM	Legionella pneumophila strain ERS1305867	49.801	100	0.504
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	44.97	100	0.46

Detailed information NTG0568476