Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KI615_RS00275 Genome accession   NZ_CP075186
Coordinates   61019..62512 (-) Length   497 a.a.
NCBI ID   WP_226471974.1    Uniprot ID   -
Organism   Dechloromonas denitrificans strain G6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 56019..67512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI615_RS00260 (KI615_00265) - 58824..59318 (-) 495 WP_226417845.1 outer membrane protein assembly factor BamE -
  KI615_RS00265 (KI615_00270) - 59449..59841 (+) 393 WP_226417846.1 rhodanese-like domain-containing protein -
  KI615_RS00270 (KI615_00275) - 59821..61026 (-) 1206 WP_226471973.1 multidrug effflux MFS transporter -
  KI615_RS00275 (KI615_00280) comM 61019..62512 (-) 1494 WP_226471974.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KI615_RS00280 (KI615_00285) - 62519..62761 (-) 243 WP_226417849.1 accessory factor UbiK family protein -
  KI615_RS00285 (KI615_00290) - 63005..63862 (+) 858 WP_226417850.1 TorF family putative porin -
  KI615_RS00290 (KI615_00295) glnK 63944..64282 (+) 339 WP_226417851.1 P-II family nitrogen regulator -
  KI615_RS00295 (KI615_00300) - 64293..65798 (+) 1506 WP_226417852.1 ammonium transporter -
  KI615_RS00300 (KI615_00305) - 65857..66399 (-) 543 WP_226417853.1 hydrolase -
  KI615_RS00305 (KI615_00310) purU 66403..67266 (-) 864 WP_226417854.1 formyltetrahydrofolate deformylase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52260.04 Da        Isoelectric Point: 8.1989

>NTDB_id=568453 KI615_RS00275 WP_226471974.1 61019..62512(-) (comM) [Dechloromonas denitrificans strain G6]
MALAIAHSRGLDGLNAPPVTVEVHLASGLPSFTLVGLPDTEVKEARDRVRAAIVNSGFEFPSKRITVNLAPADLPKESGR
FDLPIAIGILAASNQTSGKALADYEFAGELSLSGELRPIRGALAMALQTAGNGKAFILPEASAREAALTGAGEILSATSL
LAVCAHLSGQALLPTAVAEAGENLPVFPDLTEVRGQAQAKRALEIAAAGNHSLLMVGPPGSGKSMLAARLPGLMPALHPA
AAKESAAVLSLVGQFRPAAFGVRPYRQPHHTASAVALVGGGNPPRPGEISLAHQGVLFLDELTEFDRKVLETLREPLETG
RIHIARAARQAEFPAEFQLVAAMNPCPCGFLSHGNGKCRCTPDQIARYRGKLSGPFLDRIDLLLEVPALPAEALTGKADG
ESSATVRARVETALARQMARQNKVNARLNAGEVDIHCEPDEAGCKLLKQATTQLDLSARAWHRILKVARTIADLAGSDAI
RAAHIGEAIQYRRFARG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=568453 KI615_RS00275 WP_226471974.1 61019..62512(-) (comM) [Dechloromonas denitrificans strain G6]
ATGGCGCTGGCCATTGCTCACAGCCGCGGGCTGGACGGCCTGAATGCGCCGCCGGTCACGGTCGAAGTGCATCTCGCCAG
TGGCCTGCCGAGTTTTACGCTGGTCGGCCTGCCCGACACCGAGGTCAAGGAAGCACGCGACCGGGTGCGGGCCGCCATCG
TCAATTCCGGTTTTGAATTCCCCAGCAAGCGGATCACCGTCAATCTGGCGCCCGCCGACCTGCCCAAGGAATCCGGCCGC
TTCGACCTGCCGATCGCCATCGGCATTCTGGCGGCCAGCAACCAGACGTCCGGCAAAGCGCTGGCCGACTACGAGTTTGC
CGGTGAGCTTTCGCTCTCCGGCGAATTGCGGCCGATCCGCGGGGCGCTGGCCATGGCCCTGCAAACCGCCGGCAACGGCA
AGGCTTTCATCCTGCCCGAAGCGAGCGCCCGGGAAGCCGCCTTGACCGGCGCCGGCGAGATCCTTTCGGCCACCTCGCTG
CTCGCCGTCTGCGCCCATCTGTCGGGGCAGGCCCTGCTGCCAACCGCCGTTGCGGAAGCCGGCGAAAACCTGCCGGTTTT
CCCCGACCTGACTGAAGTGCGCGGCCAGGCCCAAGCCAAGCGGGCTCTGGAAATTGCCGCAGCCGGCAATCATTCGCTGC
TGATGGTCGGCCCGCCGGGCTCCGGCAAGTCGATGCTGGCGGCTCGCCTGCCGGGCCTGATGCCGGCGTTGCACCCGGCA
GCAGCCAAGGAATCGGCGGCGGTCCTGTCGCTGGTCGGCCAGTTCCGGCCGGCAGCATTCGGCGTTCGCCCCTATCGCCA
GCCGCACCACACCGCGTCGGCCGTCGCCTTGGTGGGCGGTGGTAATCCACCACGCCCGGGCGAAATCAGCCTGGCGCATC
AAGGCGTTCTGTTCCTCGACGAGCTGACGGAGTTCGACCGGAAAGTCCTGGAAACCCTGCGCGAGCCCCTCGAAACCGGG
CGTATCCACATCGCCCGCGCCGCCCGCCAGGCCGAGTTTCCCGCCGAGTTCCAACTGGTCGCGGCGATGAATCCCTGCCC
CTGTGGCTTTCTCAGTCACGGTAACGGGAAATGCCGGTGTACACCGGATCAGATCGCCCGCTACCGCGGCAAGCTGTCCG
GACCTTTCCTCGACCGTATCGACCTGCTCCTCGAAGTACCGGCCCTGCCGGCCGAGGCGCTGACCGGCAAGGCCGATGGC
GAAAGCTCGGCGACCGTCCGGGCCCGCGTCGAAACGGCACTGGCTCGCCAGATGGCACGCCAGAACAAGGTCAATGCCCG
ACTGAACGCCGGCGAAGTCGATATCCACTGCGAGCCGGACGAAGCCGGGTGCAAGCTGCTCAAGCAGGCGACGACCCAGC
TCGACCTGTCGGCCCGGGCCTGGCACCGGATACTCAAGGTCGCCCGGACCATTGCCGACCTGGCCGGCAGCGACGCCATC
CGCGCCGCCCACATCGGCGAAGCCATCCAGTATCGCCGGTTTGCCCGTGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.908

100

0.541
  comM Vibrio campbellii strain DS40M4

53.908

100

0.541
  comM Haemophilus influenzae Rd KW20

52.183

100

0.529
  comM Glaesserella parasuis strain SC1401

51.19

100

0.519
  comM Legionella pneumophila str. Paris

49.606

100

0.507
  comM Legionella pneumophila strain ERS1305867

49.606

100

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.664

100

0.455