NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	KI611_RS00275	Genome accession	NZ_CP075185
Coordinates	60220..61713 (-)	Length	497 a.a.
NCBI ID	WP_226417848.1	Uniprot ID	-
Organism	Dechloromonas denitrificans strain 110
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 55220..66713

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KI611_RS00260 (KI611_00250)	-	58025..58519 (-)	495	WP_226417845.1	outer membrane protein assembly factor BamE	-
KI611_RS00265 (KI611_00255)	-	58650..59042 (+)	393	WP_226417846.1	rhodanese-like domain-containing protein	-
KI611_RS00270 (KI611_00260)	-	59022..60227 (-)	1206	WP_226417847.1	multidrug effflux MFS transporter	-
KI611_RS00275 (KI611_00265)	comM	60220..61713 (-)	1494	WP_226417848.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
KI611_RS00280 (KI611_00270)	-	61720..61962 (-)	243	WP_226417849.1	accessory factor UbiK family protein	-
KI611_RS00285 (KI611_00275)	-	62206..63063 (+)	858	WP_226417850.1	TorF family putative porin	-
KI611_RS00290 (KI611_00280)	glnK	63145..63483 (+)	339	WP_226417851.1	P-II family nitrogen regulator	-
KI611_RS00295 (KI611_00285)	-	63494..64999 (+)	1506	WP_226417852.1	ammonium transporter	-
KI611_RS00300 (KI611_00290)	-	65058..65600 (-)	543	WP_226417853.1	hydrolase	-
KI611_RS00305 (KI611_00295)	purU	65604..66467 (-)	864	WP_226417854.1	formyltetrahydrofolate deformylase	-

Sequence

Protein

Download Length: 497 a.a. Molecular weight: 52291.05 Da Isoelectric Point: 8.1989

                                >NTDB_id=568429 KI611_RS00275 WP_226417848.1 60220..61713(-) (comM) [Dechloromonas denitrificans strain 110]

MALAIAHSRGLDGLNAQPVTVEVHLASGLPSFTLVGLPDTEVKEARDRVRAAIVNSGFEFPSKRITVNLAPADLPKESGR

FDLPIAIGILAASNQTSGKALADYEFAGELSLSGELRPIRGALAMALQTAGNGKAFILPEASAREAALTGAGEILSATSL

LAVCAHLSGQALLPTAVAEAGENLPVFPDLTEVRGQAQAKRALEIAAAGNHSLLMVGPPGSGKSMLAARLPGLMPALHPA

AAKESAAVLSLVGQFRPAAFGVRPYRQPHHTASAVALVGGGNPPRPGEISLAHQGVLFLDELTEFDRKVLETLREPLETG

RIHIARAARQAEFPAEFQLVAAMNPCPCGFLSHGNGKCRCTPDQIARYRGKLSGPFLDRIDLLLEVPALPAEALTGKADG

ESSATVRARVETALARQMARQNKVNARLNAGEVDIHCEPDEAGCKLLKQATTQLDLSARAWHRILKVARTIADLAGSDAI

RAAHIGEAIQYRRFARG

Nucleotide

Download Length: 1494 bp

                                >NTDB_id=568429 KI611_RS00275 WP_226417848.1 60220..61713(-) (comM) [Dechloromonas denitrificans strain 110]

ATGGCGCTGGCCATTGCTCACAGCCGCGGGCTGGACGGCCTGAATGCGCAGCCGGTCACGGTCGAAGTGCATCTCGCCAG

TGGCCTGCCGAGTTTTACGCTGGTCGGCCTGCCCGACACCGAGGTCAAGGAAGCACGCGACCGGGTGCGGGCCGCCATCG

TCAATTCCGGTTTTGAATTCCCCAGCAAGCGGATCACCGTCAATCTGGCGCCCGCCGACCTGCCCAAGGAATCCGGCCGC

TTCGACCTGCCGATCGCCATCGGCATTCTGGCGGCCAGCAACCAGACGTCCGGCAAAGCGCTGGCCGACTACGAGTTTGC

CGGTGAGCTTTCGCTCTCCGGCGAATTGCGGCCGATCCGCGGGGCGCTGGCCATGGCCCTGCAAACCGCCGGCAACGGCA

AGGCTTTCATCCTGCCCGAAGCGAGCGCCCGGGAAGCCGCCTTGACCGGCGCCGGCGAGATCCTTTCGGCCACCTCGCTG

CTCGCCGTCTGCGCCCATCTGTCGGGGCAGGCCCTGCTGCCAACCGCCGTTGCGGAAGCCGGCGAAAACCTGCCGGTTTT

CCCCGACCTGACTGAAGTGCGCGGCCAGGCCCAAGCCAAGCGGGCTCTGGAAATTGCCGCAGCCGGCAATCATTCGCTGC

TGATGGTCGGCCCGCCGGGCTCCGGCAAGTCGATGCTGGCGGCTCGCCTGCCGGGCCTGATGCCGGCGTTGCACCCGGCA

GCAGCCAAGGAATCGGCGGCGGTCCTGTCGCTGGTCGGCCAGTTCCGGCCGGCAGCATTCGGCGTTCGCCCCTATCGCCA

GCCGCACCACACCGCGTCGGCCGTCGCCTTGGTGGGCGGTGGTAATCCACCACGCCCGGGCGAAATCAGCCTGGCGCATC

AAGGCGTTCTGTTCCTCGACGAGCTGACGGAGTTCGACCGGAAAGTCCTGGAAACCCTGCGCGAGCCCCTCGAAACCGGG

CGTATCCACATCGCCCGCGCCGCCCGCCAGGCCGAGTTTCCCGCCGAGTTCCAACTGGTCGCGGCGATGAATCCCTGCCC

CTGTGGCTTTCTCAGTCACGGTAACGGGAAATGCCGGTGTACACCGGATCAGATCGCCCGCTACCGCGGCAAGCTGTCCG

GACCTTTCCTCGACCGTATCGACCTGCTCCTCGAAGTACCGGCCCTGCCGGCCGAGGCGCTGACCGGCAAGGCCGATGGC

GAAAGCTCGGCGACCGTCCGGGCCCGCGTCGAAACGGCACTGGCTCGCCAGATGGCACGCCAGAACAAGGTCAATGCCCG

ACTGAACGCCGGCGAAGTCGATATCCACTGCGAGCCGGACGAAGCCGGGTGCAAGCTGCTCAAGCAGGCGACGACCCAGC

TCGACCTGTCGGCCCGGGCCTGGCACCGGATACTCAAGGTCGCCCGGACCATTGCCGACCTGGCCGGCAGCGACGCCATC

CGCGCCGCCCACATCGGCGAAGCCATCCAGTATCGCCGGTTTGCCCGTGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-392)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	53.707	100	0.539
comM	Vibrio campbellii strain DS40M4	53.707	100	0.539
comM	Haemophilus influenzae Rd KW20	51.984	100	0.527
comM	Glaesserella parasuis strain SC1401	50.992	100	0.517
comM	Legionella pneumophila str. Paris	49.803	100	0.509
comM	Legionella pneumophila strain ERS1305867	49.803	100	0.509
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	44.862	100	0.457

Detailed information NTG0568429