Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KI609_RS01290 Genome accession   NZ_CP075184
Coordinates   300309..301853 (-) Length   514 a.a.
NCBI ID   WP_226446337.1    Uniprot ID   -
Organism   Acidovorax radicis strain 79     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 295309..306853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI609_RS01265 (KI609_01255) - 295845..296630 (-) 786 WP_226446328.1 crotonase/enoyl-CoA hydratase family protein -
  KI609_RS01270 (KI609_01260) - 296790..297677 (+) 888 WP_226446330.1 amidohydrolase family protein -
  KI609_RS01275 (KI609_01265) - 297706..298224 (-) 519 WP_226446331.1 MarR family winged helix-turn-helix transcriptional regulator -
  KI609_RS01280 (KI609_01270) - 298406..299308 (-) 903 WP_226446332.1 LysR family transcriptional regulator -
  KI609_RS01285 (KI609_01275) - 299436..300221 (+) 786 WP_226446335.1 SDR family oxidoreductase -
  KI609_RS01290 (KI609_01280) comM 300309..301853 (-) 1545 WP_226446337.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KI609_RS01295 (KI609_01285) - 302068..302778 (+) 711 WP_226446339.1 TorF family putative porin -
  KI609_RS01300 (KI609_01290) glnK 302909..303247 (+) 339 WP_226446341.1 P-II family nitrogen regulator -
  KI609_RS01305 (KI609_01295) amt 303286..304707 (+) 1422 WP_226446342.1 ammonium transporter -
  KI609_RS01310 (KI609_01300) glcE 304941..306071 (+) 1131 WP_226446343.1 glycolate oxidase subunit GlcE -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 53660.43 Da        Isoelectric Point: 6.9247

>NTDB_id=568411 KI609_RS01290 WP_226446337.1 300309..301853(-) (comM) [Acidovorax radicis strain 79]
MSLALVQSRALVGLQAPAVTVEVHLANGLPSFTLVGLAEVEVKEARERVRSALQNAGLEFPTNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDGAQLAGYEFAGELSLSGELRPVRGALATSLALQTQQIDAQLVLPPGSAEEAALVPAAQVVRA
CHLLDVVQAFLPPGSVAGGDADIPNDGWTRLQATPMAVSNTGPDMADVKGQAAAKRALEIAAAGGHSVLMAGPPGSGKSM
LALRFAGLLPAMTVEEALESAAIASLAGRFSPDTWGRRPTGTPHHTASAVALVGGGSPPRPGEISLAHQGVLFLDELPEF
PRAALEALREPLETGHITISRAAQRAEFPARFQMIAAMNPCPCGFLGSPQRACRCTPDQVARYQGKLSGPLLDRIDLHVE
VPALPPDQLVQAPAGEATATMRERVERARALAMARQGKTNQALQGQEIDDHVHLDAAAAKFLNVAAARLGWSARSTHRAL
KVARTIADLAGAPTTEVSHVAEAVQYRRVLRAPG

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=568411 KI609_RS01290 WP_226446337.1 300309..301853(-) (comM) [Acidovorax radicis strain 79]
ATGAGTCTTGCTTTGGTGCAAAGTCGCGCGCTTGTGGGGCTGCAGGCCCCTGCGGTCACCGTTGAAGTGCACCTGGCCAA
TGGCCTGCCCAGCTTCACCCTGGTAGGTCTCGCTGAGGTCGAGGTCAAAGAAGCCCGCGAACGCGTGCGCTCGGCGCTGC
AGAACGCGGGGCTGGAGTTCCCGACCAACAAGCGCATTACCGTCAATCTCGCCCCTGCCGACCTGCCCAAGGATTCCGGC
CGCTTCGACCTCCCCATTGCCTTGGGCATCCTCGCGGCCAGCGGGCAGATCGATGGCGCGCAACTGGCGGGGTATGAGTT
CGCGGGCGAACTGTCGCTGTCCGGCGAATTGCGCCCCGTGCGGGGCGCGCTGGCCACCAGCCTGGCGCTGCAAACGCAGC
AGATCGACGCCCAACTGGTGCTGCCGCCCGGCAGCGCCGAAGAAGCGGCCCTGGTGCCCGCCGCCCAAGTGGTGCGCGCC
TGCCATCTACTGGATGTGGTGCAGGCCTTTTTGCCACCGGGCAGCGTGGCTGGTGGCGATGCCGATATCCCCAACGACGG
CTGGACACGGTTGCAGGCCACCCCCATGGCGGTGAGCAACACCGGCCCCGACATGGCCGACGTCAAGGGCCAGGCCGCCG
CCAAACGCGCGCTGGAGATTGCGGCGGCGGGGGGGCACAGCGTGCTCATGGCAGGCCCGCCCGGCTCGGGCAAGTCGATG
CTGGCGCTGCGTTTTGCGGGGCTGCTGCCTGCCATGACGGTCGAAGAAGCACTAGAGAGCGCGGCCATCGCCAGCCTGGC
CGGGCGTTTCAGCCCCGACACCTGGGGCCGCCGGCCCACCGGAACACCGCACCACACCGCCAGTGCGGTGGCGCTGGTGG
GTGGCGGCTCTCCACCCCGGCCCGGCGAAATTTCGCTGGCCCACCAGGGCGTGCTTTTTCTGGATGAATTGCCGGAATTC
CCCAGGGCAGCGCTGGAGGCCTTGCGCGAGCCCCTGGAGACCGGGCACATCACCATTTCGCGGGCGGCGCAGCGGGCAGA
GTTTCCGGCCCGGTTTCAGATGATTGCGGCCATGAACCCCTGCCCCTGCGGCTTTCTGGGCTCGCCCCAGCGCGCCTGCC
GGTGCACGCCCGACCAGGTGGCACGCTATCAGGGCAAACTCAGCGGCCCGCTGCTCGACCGCATCGACCTGCATGTGGAA
GTACCCGCCCTGCCGCCCGACCAACTGGTGCAGGCACCCGCAGGCGAGGCCACGGCCACCATGCGCGAGCGGGTGGAGCG
TGCGCGGGCCCTGGCCATGGCCCGCCAGGGCAAAACCAACCAGGCGCTGCAGGGCCAGGAGATCGACGACCACGTGCACC
TGGACGCAGCAGCGGCCAAGTTCCTCAACGTCGCTGCAGCGCGCCTGGGCTGGTCGGCCCGCAGCACGCACCGGGCGCTG
AAGGTGGCGCGCACCATCGCCGACCTGGCAGGCGCGCCCACCACCGAGGTCAGCCATGTCGCCGAGGCGGTGCAATACCG
CCGTGTGTTGCGTGCGCCGGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(415-507)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(204-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.539

99.611

0.523
  comM Vibrio campbellii strain DS40M4

52.039

100

0.521
  comM Haemophilus influenzae Rd KW20

51.751

100

0.518
  comM Glaesserella parasuis strain SC1401

50.584

100

0.506
  comM Legionella pneumophila str. Paris

49.136

100

0.498
  comM Legionella pneumophila strain ERS1305867

49.136

100

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.248

100

0.424