Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KIK04_RS10420 Genome accession   NZ_CP075175
Coordinates   2392993..2393523 (+) Length   176 a.a.
NCBI ID   WP_232278164.1    Uniprot ID   -
Organism   Paenibacillus sp. 481     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2387993..2398523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIK04_RS10380 (KIK04_10440) - 2388769..2389305 (+) 537 WP_232278158.1 DUF4446 family protein -
  KIK04_RS10385 (KIK04_10445) yyaC 2389361..2389942 (-) 582 WP_269671017.1 spore protease YyaC -
  KIK04_RS10390 (KIK04_10450) - 2390051..2390347 (+) 297 WP_232278159.1 DUF3343 domain-containing protein -
  KIK04_RS10395 (KIK04_10455) - 2390350..2391291 (+) 942 WP_232278160.1 mechanosensitive ion channel family protein -
  KIK04_RS10400 (KIK04_10460) - 2391281..2391502 (+) 222 WP_232278161.1 DUF951 domain-containing protein -
  KIK04_RS10410 (KIK04_10470) - 2392180..2392374 (-) 195 WP_232278162.1 YjzC family protein -
  KIK04_RS10415 (KIK04_10475) rpsF 2392658..2392942 (+) 285 WP_232278163.1 30S ribosomal protein S6 -
  KIK04_RS10420 (KIK04_10480) ssbA 2392993..2393523 (+) 531 WP_232278164.1 single-stranded DNA-binding protein Machinery gene
  KIK04_RS10425 (KIK04_10485) rpsR 2393545..2393820 (+) 276 WP_232278165.1 30S ribosomal protein S18 -
  KIK04_RS10430 (KIK04_10490) - 2393984..2394448 (-) 465 WP_232278166.1 MarR family transcriptional regulator -
  KIK04_RS10435 (KIK04_10495) - 2394592..2395785 (+) 1194 WP_232278167.1 cytochrome P450 -
  KIK04_RS10440 (KIK04_10500) - 2396027..2396830 (+) 804 WP_232278168.1 DUF421 domain-containing protein -
  KIK04_RS10445 (KIK04_10505) - 2396870..2397850 (+) 981 WP_232278169.1 LCP family protein -
  KIK04_RS10450 (KIK04_10510) - 2397975..2398397 (+) 423 WP_232278170.1 CBS domain-containing protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19291.15 Da        Isoelectric Point: 4.8195

>NTDB_id=568298 KIK04_RS10420 WP_232278164.1 2392993..2393523(+) (ssbA) [Paenibacillus sp. 481]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPYSSQSGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
SYDNNEGKRVYVTEIIADNVRFLESNRDSGGMREDMGGGQGAPAPSSYGQNSQNSQGSQSGQPRGGSNNNYSRGPAADPF
SDDGRPIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=568298 KIK04_RS10420 WP_232278164.1 2392993..2393523(+) (ssbA) [Paenibacillus sp. 481]
ATGTTGAATCGCGTGATTTTAATTGGTCGTCTGACGCGTGACCCGGAATTACGCTACACACCAGCAGGAGTTGCGGTAAC
GCAATTTACGTTGGCGGTAGACCGACCGTATTCGAGTCAGTCTGGTGAACGTGAAGCGGATTTCATTCCAGTCGTCACAT
GGCGACAGTTAGCAGAGACATGTGCAAACTATTTGCGCAAAGGTCGACTGACTGCAGTGGAAGGACGCATCCAAGTTCGT
AGCTACGACAATAATGAAGGAAAGCGTGTATACGTAACTGAAATTATTGCCGATAATGTTCGTTTCTTGGAATCTAACCG
CGATAGCGGTGGAATGCGTGAAGATATGGGTGGCGGACAAGGTGCACCTGCACCTAGCTCGTATGGTCAAAACTCGCAGA
ACTCTCAAGGTTCGCAGAGTGGACAGCCTCGTGGCGGTTCGAACAACAACTATTCGCGTGGACCAGCAGCGGATCCTTTC
TCAGACGACGGAAGACCGATCGATATTTCTGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.667

100

0.528
  ssb Latilactobacillus sakei subsp. sakei 23K

47.727

100

0.477
  ssb Neisseria meningitidis MC58

37.363

100

0.386
  ssb Neisseria gonorrhoeae MS11

37.363

100

0.386
  ssb Glaesserella parasuis strain SC1401

35.87

100

0.375