Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   KIP81_RS09095 Genome accession   NZ_CP075172
Coordinates   1831692..1833671 (-) Length   659 a.a.
NCBI ID   WP_243602866.1    Uniprot ID   -
Organism   Streptococcus equinus strain SheepZ001     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1826692..1838671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP81_RS09075 (KIP81_09065) amiF 1827208..1828137 (-) 930 WP_243602864.1 ATP-binding cassette domain-containing protein Regulator
  KIP81_RS09080 (KIP81_09070) amiE 1828130..1829197 (-) 1068 WP_039691326.1 ABC transporter ATP-binding protein Regulator
  KIP81_RS09085 (KIP81_09075) amiD 1829206..1830132 (-) 927 WP_243603402.1 oligopeptide ABC transporter permease OppC Regulator
  KIP81_RS09090 (KIP81_09080) amiC 1830132..1831631 (-) 1500 WP_243602865.1 ABC transporter permease Regulator
  KIP81_RS09095 (KIP81_09085) amiA 1831692..1833671 (-) 1980 WP_243602866.1 peptide ABC transporter substrate-binding protein Regulator
  KIP81_RS09100 (KIP81_09090) - 1833944..1835110 (-) 1167 WP_021143228.1 MFS transporter -
  KIP81_RS09105 (KIP81_09095) gltX 1835308..1836765 (-) 1458 WP_021143229.1 glutamate--tRNA ligase -
  KIP81_RS09110 (KIP81_09100) - 1836944..1837870 (-) 927 WP_243602867.1 aldo/keto reductase -
  KIP81_RS09115 (KIP81_09105) - 1837899..1838396 (-) 498 WP_243602868.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73103.55 Da        Isoelectric Point: 4.4845

>NTDB_id=568278 KIP81_RS09095 WP_243602866.1 1831692..1833671(-) (amiA) [Streptococcus equinus strain SheepZ001]
MNKRGKWILSAGVVLLSASVLAACGNGKSSSSATSTYNYVYNSEPVSLDYIKMNQSGTSNITANLIDGLMENDQYGDLIP
SLAKDWKVSADGLTYTYTIRDDAKWYTADGEEYADVTAEDFVTGLKHAADVESEALYIVQDSIKGLQDYIDGKTKDFSTV
GVKAVDDHTVQYTLNAPESYWNSKLTYGIMCPVNADFLKSKGNDFGKQTDPESLLYNGPYLLKSITAKSSMEFEKNPNYW
DADNVHIDDVKLTYFDGSDQDSLFNNFDEGSYTSAALYPSSPSYKTAEKKYSDNIVYAQQDASTFMIYFNLNRTLHNLSD
KTDAQLSDSNKAMNNKDFRQAVTFAFDRGSWNAQTAGEEAKNKALRNSLVPPAFVQVDGKEFGDVVKSDLASYGDEWKDV
DLTDAQDGLYNPDKAKAEFAKAKSALESEGVSFPIQLDFPVAQTNNDSVQRAQSLKQSVESNLGKENVVINLKQVTEDEY
LSATYQAESPEQNDYDLGFSGWTPDYSDPSSYLDIFGTGKTAAMTYRLGISSDNDALIKSTGLDQYQSLLDEANALKDSD
QVDQRYETYAKAQAWLTDSALAIPTVTNGARPQVTRVKPFSGAWSYVGIKGGAYQYKYRKLQDKPVTAKEYEKAHNKWLN
DKEKANEKAAKELAKHVEK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=568278 KIP81_RS09095 WP_243602866.1 1831692..1833671(-) (amiA) [Streptococcus equinus strain SheepZ001]
ATGAACAAAAGAGGAAAATGGATTTTAAGTGCTGGTGTTGTGCTACTATCTGCATCAGTGCTTGCAGCTTGTGGTAATGG
CAAATCTTCAAGCTCTGCAACGTCAACTTACAACTATGTCTACAATTCTGAACCAGTTTCACTTGATTATATTAAGATGA
ACCAATCTGGTACAAGTAACATTACAGCAAACCTTATTGATGGTTTGATGGAAAATGACCAGTATGGCGACTTGATTCCG
TCACTTGCAAAAGATTGGAAAGTGTCAGCTGATGGTTTGACTTACACTTATACAATTCGTGATGATGCCAAATGGTATAC
TGCTGATGGTGAAGAATATGCGGATGTAACAGCGGAAGATTTTGTTACAGGTCTCAAACACGCTGCAGATGTTGAATCAG
AAGCTCTTTATATTGTGCAAGATTCAATTAAAGGTTTGCAGGATTATATTGATGGCAAGACAAAAGACTTCTCAACAGTT
GGTGTTAAAGCAGTTGATGACCATACTGTCCAATATACGCTGAACGCCCCTGAATCATATTGGAATTCTAAATTAACTTA
CGGTATTATGTGTCCAGTAAATGCGGACTTCTTAAAATCAAAAGGTAATGATTTTGGTAAACAAACTGACCCAGAATCAT
TGCTTTATAACGGTCCATACTTACTAAAATCAATTACAGCCAAATCTTCAATGGAATTTGAAAAGAACCCGAATTATTGG
GATGCTGACAACGTCCATATCGATGATGTTAAGTTGACTTATTTTGACGGTTCAGACCAAGATTCACTCTTTAACAATTT
TGATGAAGGTTCATATACAAGTGCAGCCTTGTATCCATCATCTCCAAGCTATAAAACAGCAGAAAAGAAATATAGTGATA
ATATTGTTTATGCTCAACAAGATGCTTCAACATTTATGATTTACTTCAATTTAAATCGTACTTTGCATAATTTATCAGAT
AAAACAGATGCGCAATTATCTGATTCTAATAAAGCTATGAACAATAAAGACTTCCGTCAAGCAGTGACATTTGCATTTGA
CCGTGGTTCATGGAACGCTCAAACTGCAGGTGAAGAAGCCAAGAATAAAGCATTACGCAATAGCTTGGTACCACCAGCAT
TTGTTCAAGTTGATGGTAAAGAGTTTGGTGATGTTGTTAAAAGTGACCTAGCATCATATGGAGATGAGTGGAAAGATGTC
GACCTTACAGATGCTCAAGATGGTTTGTATAACCCAGATAAAGCAAAAGCAGAATTTGCTAAAGCCAAATCAGCTCTTGA
ATCAGAAGGCGTCAGCTTCCCAATCCAACTTGATTTCCCAGTTGCTCAAACTAACAACGATTCTGTACAACGTGCACAAT
CATTAAAACAGTCAGTTGAATCTAATCTCGGTAAAGAAAATGTAGTGATTAACCTTAAACAAGTCACAGAAGATGAGTAC
TTATCAGCAACTTATCAAGCAGAAAGTCCTGAGCAAAATGACTATGACCTAGGATTCTCAGGATGGACACCAGACTATTC
TGATCCATCTTCATATCTTGATATCTTTGGTACAGGTAAGACAGCGGCAATGACATATCGTCTTGGTATTTCTTCAGATA
ATGACGCCTTGATTAAATCTACTGGTCTTGATCAATATCAAAGCTTGCTTGATGAAGCAAATGCTCTTAAAGATTCAGAT
CAGGTTGATCAACGTTATGAAACATACGCAAAAGCTCAAGCATGGTTGACAGACAGTGCATTAGCTATTCCAACAGTTAC
TAATGGTGCTCGTCCACAAGTGACAAGAGTAAAACCATTTTCAGGAGCTTGGTCATATGTTGGTATTAAAGGTGGAGCTT
ATCAATATAAATATCGAAAACTCCAAGATAAACCTGTAACAGCTAAAGAATATGAAAAAGCTCATAATAAATGGCTTAAT
GATAAAGAAAAAGCCAATGAAAAGGCTGCAAAAGAATTAGCTAAACACGTAGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

54.021

100

0.54
  amiA3 Streptococcus thermophilus LMD-9

53.03

100

0.531
  amiA3 Streptococcus thermophilus LMG 18311

52.879

100

0.53