Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   KIP81_RS09075 Genome accession   NZ_CP075172
Coordinates   1827208..1828137 (-) Length   309 a.a.
NCBI ID   WP_243602864.1    Uniprot ID   -
Organism   Streptococcus equinus strain SheepZ001     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1822208..1833137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP81_RS09055 (KIP81_09045) - 1822776..1823591 (-) 816 WP_039697830.1 YidC/Oxa1 family membrane protein insertase -
  KIP81_RS09060 (KIP81_09050) rnpA 1823575..1823934 (-) 360 WP_024344384.1 ribonuclease P protein component -
  KIP81_RS09065 (KIP81_09055) argH 1824086..1825468 (-) 1383 WP_074483841.1 argininosuccinate lyase -
  KIP81_RS09070 (KIP81_09060) - 1825818..1827008 (-) 1191 WP_243602863.1 argininosuccinate synthase -
  KIP81_RS09075 (KIP81_09065) amiF 1827208..1828137 (-) 930 WP_243602864.1 ATP-binding cassette domain-containing protein Regulator
  KIP81_RS09080 (KIP81_09070) amiE 1828130..1829197 (-) 1068 WP_039691326.1 ABC transporter ATP-binding protein Regulator
  KIP81_RS09085 (KIP81_09075) amiD 1829206..1830132 (-) 927 WP_243603402.1 oligopeptide ABC transporter permease OppC Regulator
  KIP81_RS09090 (KIP81_09080) amiC 1830132..1831631 (-) 1500 WP_243602865.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35016.08 Da        Isoelectric Point: 6.6702

>NTDB_id=568274 KIP81_RS09075 WP_243602864.1 1827208..1828137(-) (amiF) [Streptococcus equinus strain SheepZ001]
MTEKLVEVKNLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNETSNGDILYAGKRINGKKTSA
EHSDLISKIQMIFQDPAASLNERATVDYIISEGLYNFHHFEDDADRKRKVVEMMTEVGLLPEHLTRYPHEFSGGQRQRIG
IARALVMDPEFIIADEPISALDVSVRAQVLNLLKRIQREKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTRSLLSAVPIPDPILERQKELIVYDPSQHDYSTDKPEMVEIRPNHFVWANKVELSDYQKRLNK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=568274 KIP81_RS09075 WP_243602864.1 1827208..1828137(-) (amiF) [Streptococcus equinus strain SheepZ001]
ATGACTGAAAAATTAGTTGAAGTAAAAAATTTGGAAATTTCCTTTGGTGAAGGAAAAAAGAAATTTGTTGCGGTTAAAAA
TGCAAATTTTTTCATCAATAAAGGTGAGACTTTCTCATTAGTTGGTGAATCAGGTTCGGGGAAAACAACCATCGGTCGTG
CTATCATCGGATTGAATGAGACAAGTAATGGCGATATTTTATATGCTGGTAAACGTATTAACGGTAAAAAAACATCTGCT
GAACATAGTGATTTGATTTCCAAAATTCAAATGATCTTCCAAGATCCAGCAGCTAGTTTAAATGAGCGAGCAACCGTTGA
TTATATTATTTCGGAGGGCTTATATAATTTTCATCATTTTGAAGATGATGCTGATCGAAAACGTAAAGTAGTAGAGATGA
TGACTGAGGTAGGATTATTGCCAGAGCATTTGACACGTTATCCACATGAATTTTCAGGGGGACAACGTCAGCGTATTGGA
ATTGCGCGTGCTTTGGTCATGGATCCTGAATTTATCATTGCAGATGAACCAATCTCAGCTTTGGATGTCTCAGTGCGTGC
TCAAGTATTAAATCTTTTGAAACGTATCCAGAGGGAAAAAGGCTTAACCTATCTCTTTATCGCACATGATTTGTCTGTGG
TTCGTTTTATTTCAGATCGTATTGCGGTTATCCATAAAGGTGTTATTGTTGAAGTAGCGGAGACAGAAGAGCTATTTAAT
AATCCAATCCATCCTTATACACGTTCATTACTTTCAGCGGTTCCAATTCCAGATCCTATTCTTGAACGCCAAAAAGAATT
AATTGTATATGATCCAAGTCAACACGATTACTCAACAGATAAACCTGAGATGGTGGAAATTCGCCCAAATCATTTTGTCT
GGGCAAATAAAGTTGAATTATCTGACTACCAAAAACGACTAAATAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

79.935

100

0.799
  amiF Streptococcus thermophilus LMG 18311

79.612

100

0.796
  amiF Streptococcus salivarius strain HSISS4

79.288

100

0.793