Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   KIP81_RS09085 Genome accession   NZ_CP075172
Coordinates   1829206..1830132 (-) Length   308 a.a.
NCBI ID   WP_243603402.1    Uniprot ID   -
Organism   Streptococcus equinus strain SheepZ001     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1824206..1835132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP81_RS09070 (KIP81_09060) - 1825818..1827008 (-) 1191 WP_243602863.1 argininosuccinate synthase -
  KIP81_RS09075 (KIP81_09065) amiF 1827208..1828137 (-) 930 WP_243602864.1 ATP-binding cassette domain-containing protein Regulator
  KIP81_RS09080 (KIP81_09070) amiE 1828130..1829197 (-) 1068 WP_039691326.1 ABC transporter ATP-binding protein Regulator
  KIP81_RS09085 (KIP81_09075) amiD 1829206..1830132 (-) 927 WP_243603402.1 oligopeptide ABC transporter permease OppC Regulator
  KIP81_RS09090 (KIP81_09080) amiC 1830132..1831631 (-) 1500 WP_243602865.1 ABC transporter permease Regulator
  KIP81_RS09095 (KIP81_09085) amiA 1831692..1833671 (-) 1980 WP_243602866.1 peptide ABC transporter substrate-binding protein Regulator
  KIP81_RS09100 (KIP81_09090) - 1833944..1835110 (-) 1167 WP_021143228.1 MFS transporter -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34769.65 Da        Isoelectric Point: 7.9086

>NTDB_id=568276 KIP81_RS09085 WP_243603402.1 1829206..1830132(-) (amiD) [Streptococcus equinus strain SheepZ001]
MTNIDKSKFEFVELDSSASEVIDTPTYSYWKSVFRQFFSKKSTIAMLILLIAILLMSFIYPMFSNFDFNDVSDINDFSKR
YVWPNSQYWFGTDKNGQSLFDGVWYGARNSILISVIATTINMVIGLVVGLLWGISKTVDKIMIEIYNVISNLPFILIVMI
LTYSLGSGFWNLILAFCITGWVGIAYSIRVQVMRYRDLEYNLASRTLGTPTIKIATKNLLPQLVSVIVTMVSQMLPSYIS
YEAFLSAFGIGLPVTEPSLGRLISNYSSNLTTNAYLFWIPLATLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=568276 KIP81_RS09085 WP_243603402.1 1829206..1830132(-) (amiD) [Streptococcus equinus strain SheepZ001]
ATGACTAATATAGACAAAAGTAAATTTGAATTTGTTGAGTTAGATAGTAGTGCCTCTGAAGTTATTGATACACCGACTTA
TTCATATTGGAAATCAGTTTTTAGACAATTCTTTTCTAAAAAGTCGACAATAGCAATGCTTATTTTGCTAATTGCTATTC
TTCTGATGAGTTTTATCTATCCAATGTTTTCAAATTTTGATTTCAATGATGTCAGTGATATTAACGATTTTTCAAAACGC
TATGTTTGGCCAAATAGTCAGTACTGGTTTGGTACGGATAAGAATGGTCAGTCGCTGTTTGATGGTGTTTGGTACGGCGC
TAGAAATTCTATATTGATTTCGGTTATTGCTACTACTATTAATATGGTTATTGGGCTTGTAGTAGGACTACTTTGGGGGA
TTTCTAAAACAGTCGATAAAATCATGATTGAAATTTATAACGTTATTTCAAATCTTCCATTTATCTTAATCGTTATGATT
TTAACGTATTCTCTAGGTTCAGGATTTTGGAATTTGATTTTGGCATTTTGTATTACAGGTTGGGTTGGTATTGCTTACTC
TATTCGTGTTCAAGTGATGCGTTATCGTGATTTGGAATACAATCTTGCTAGTCGTACTTTAGGAACACCAACTATAAAAA
TTGCGACCAAAAACCTTTTACCCCAATTAGTCTCTGTTATTGTTACTATGGTTTCTCAGATGTTGCCATCATACATTTCA
TATGAAGCCTTCCTATCTGCTTTTGGTATTGGACTTCCAGTCACTGAACCAAGTCTAGGCCGTTTGATTTCAAATTATTC
TTCTAATTTGACAACAAATGCTTATCTTTTCTGGATTCCATTAGCAACGCTCATTTTAGTATCGCTTCCTCTCTATATTG
TTGGGCAAAATCTTGCTGATGCTAGCGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

76.623

100

0.766
  amiD Streptococcus thermophilus LMG 18311

75

100

0.75
  amiD Streptococcus thermophilus LMD-9

75

100

0.75