Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GTU79_RS27775 Genome accession   NZ_CP075169
Coordinates   5974083..5974652 (-) Length   189 a.a.
NCBI ID   WP_132924587.1    Uniprot ID   A0A4R1NFK3
Organism   Sodalis ligni strain dw23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5969083..5979652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTU79_RS27745 (GTU79_27730) - 5969358..5969576 (+) 219 WP_203523712.1 hypothetical protein -
  GTU79_RS27750 (GTU79_27735) - 5969625..5970182 (+) 558 WP_203523713.1 helix-turn-helix transcriptional regulator -
  GTU79_RS27755 (GTU79_27740) - 5970295..5971080 (-) 786 WP_203523714.1 alpha/beta fold hydrolase -
  GTU79_RS27760 (GTU79_27745) - 5971196..5972104 (+) 909 WP_203523715.1 LysR family transcriptional regulator -
  GTU79_RS27765 (GTU79_27750) - 5972361..5972732 (+) 372 WP_214513569.1 hypothetical protein -
  GTU79_RS27770 (GTU79_27755) - 5972881..5973144 (+) 264 WP_214513570.1 hypothetical protein -
  GTU79_RS27775 (GTU79_27760) ssb 5974083..5974652 (-) 570 WP_132924587.1 single-stranded DNA-binding protein Machinery gene
  GTU79_RS27780 (GTU79_27765) uvrA 5974897..5977752 (+) 2856 WP_132924585.1 excinuclease ABC subunit UvrA -
  GTU79_RS27785 (GTU79_27770) - 5978336..5978992 (-) 657 WP_132927949.1 TenA family protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 19682.74 Da        Isoelectric Point: 5.2456

>NTDB_id=568180 GTU79_RS27775 WP_132924587.1 5974083..5974652(-) (ssb) [Sodalis ligni strain dw23]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANMTLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGALQTRKWTDQGGQERYTTEVVVNVGGTMQMLGGRQGGGAGAPGANAGGGQQGGWGQPQQPQGNNAQFSGNPAAAPSAT
AGRPAAAPQNNAPAAGNEPPMDFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=568180 GTU79_RS27775 WP_132924587.1 5974083..5974652(-) (ssb) [Sodalis ligni strain dw23]
ATGGCCAGCAGAGGCGTAAACAAAGTGATTCTAGTCGGAAATCTGGGCCAGGATCCGGAAGTCCGCTATATGCCGAACGG
TGGCGCGGTAGCCAACATGACTCTGGCCACTTCCGAAAGCTGGCGCGACAAGCAGACCGGCGAAACCAAGGAAAAGACCG
AATGGCACCGGGTGGTCCTGTTCGGCAAACTCGCTGAAGTGGCGGGGGAATACCTGAAAAAAGGTTCCCAGGTCTATATT
GAAGGGGCGCTGCAAACCCGCAAATGGACCGATCAAGGCGGCCAGGAACGTTACACCACCGAAGTGGTGGTCAACGTAGG
CGGCACCATGCAGATGCTGGGCGGCCGCCAGGGCGGCGGCGCGGGCGCACCCGGTGCCAATGCCGGCGGCGGACAGCAGG
GCGGTTGGGGCCAGCCGCAGCAGCCGCAGGGCAATAACGCGCAGTTCAGCGGTAATCCCGCTGCCGCGCCGTCGGCGACC
GCCGGTCGTCCCGCCGCCGCGCCGCAAAATAATGCGCCGGCTGCCGGCAATGAACCGCCGATGGATTTTGACGATGATAT
TCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R1NFK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

67.016

100

0.677
  ssb Glaesserella parasuis strain SC1401

55.08

98.942

0.545
  ssb Neisseria meningitidis MC58

48.925

98.413

0.481
  ssb Neisseria gonorrhoeae MS11

48.925

98.413

0.481
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.702

99.471

0.365