Detailed information NTG0568167

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: GTU79_RS01340
• Genome accession: NZ_CP075169
• Coordinates: 297829..299352 (-)
• Length: 507 a.a.
• NCBI ID: WP_203524398.1
• Uniprot ID: -
• Organism: Sodalis ligni strain dw23
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 292829..304352

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTU79_RS01315 (GTU79_01315)	ytfR	292864..294366 (+)	1503	WP_203524539.1	galactofuranose ABC transporter, ATP-binding protein YtfR	-
GTU79_RS01320 (GTU79_01320)	ytfT	294380..295396 (+)	1017	WP_203524400.1	galactofuranose ABC transporter, ATP-binding protein YtfT	-
GTU79_RS01325 (GTU79_01325)	yjfF	295389..296417 (+)	1029	WP_132923849.1	galactofuranose ABC transporter, permease protein YjfF	-
GTU79_RS01330 (GTU79_01330)	hdfR	296524..297342 (-)	819	WP_203524399.1	HTH-type transcriptional regulator HdfR	-
GTU79_RS01335 (GTU79_01335)	-	297464..297802 (+)	339	WP_132923847.1	DUF413 domain-containing protein	-
GTU79_RS01340 (GTU79_01340)	comM	297829..299352 (-)	1524	WP_203524398.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
GTU79_RS01345 (GTU79_01345)	ilvL	299712..299810 (+)	99	WP_132923845.1	ilv operon leader peptide	-
GTU79_RS01350 (GTU79_01350)	ilvG	299970..301616 (+)	1647	WP_203524397.1	acetolactate synthase 2 catalytic subunit	-
GTU79_RS01355 (GTU79_01355)	ilvM	301613..301870 (+)	258	WP_132923843.1	acetolactate synthase 2 small subunit	-
GTU79_RS01360 (GTU79_01360)	-	301892..302821 (+)	930	WP_132923842.1	branched-chain amino acid transaminase	-

Sequence

Protein

• Length: 507 a.a.
• Molecular weight: 55332.45 Da
• Isoelectric Point: 8.2003

>NTDB_id=568167 GTU79_RS01340 WP_203524398.1 297829..299352(-) (comM) [Sodalis ligni strain dw23]
MSLAFVYTRASIGVQAPLITVEAHISKGLPGFTLVGLPDATVKGARDRVRSALLNNGFDFPARRITVSLAPADLPKEGGR
YDLPIAMAILAASQQVPHEKLVGFEFLGELALSGEIRPVQGAIPAALEASRAERQLILSNRNGAEAGLVPHSRVRTAERL
QEVCRFIQGAGELAAVAYHADPPDEHEGTDLRDIIGQQQAKRALEIAAAGGHNLLLMGPPGTGKTMLASRLPGLLPALDD
HEAIETAAIASLISVDNARRHWRRRPFRAPHHSATLAALVGGGAIPRPGEVSLAHNGVLFLDELPEFQRRVLDALREPLE
AGEINISRAQAKVLYPARFQLIGAMNPSPSGDYQGVHSRSGPQQTLRYLNRLSGPFLDRFDMSIEVPLLPPGMLRQPGTD
GEQSATVRERVRIARLAQLGRCQKINAHMNNQEVSVYCRLDEAEAIFLENIMEKLGLSARAWHRTLKVARTLADLAGEPE
IRRCHLAEAVSYRSIDRLLQQLWQQME

Nucleotide

• Length: 1524 bp

>NTDB_id=568167 GTU79_RS01340 WP_203524398.1 297829..299352(-) (comM) [Sodalis ligni strain dw23]
ATGTCACTCGCATTCGTCTATACCCGGGCTTCAATTGGCGTCCAGGCCCCCTTGATAACAGTGGAGGCCCACATCAGCAA
GGGATTGCCCGGATTTACCCTGGTGGGGCTGCCCGACGCCACCGTCAAGGGCGCGCGGGATCGGGTACGCAGCGCGTTAT
TGAATAATGGCTTCGATTTTCCCGCCCGGCGCATTACCGTCAGTCTGGCGCCGGCGGATCTGCCCAAAGAGGGCGGACGT
TATGATTTGCCTATTGCCATGGCCATCCTGGCGGCGTCACAGCAGGTCCCCCATGAGAAGCTGGTCGGGTTTGAATTCCT
CGGTGAACTGGCGCTGTCCGGTGAAATCCGGCCGGTACAAGGGGCAATCCCCGCCGCGCTGGAAGCGTCACGGGCAGAGC
GGCAGCTTATACTGTCGAACCGCAACGGCGCCGAAGCCGGGCTGGTGCCCCATAGCCGTGTTCGGACAGCCGAACGGCTG
CAGGAGGTCTGCCGGTTTATACAGGGGGCGGGAGAACTGGCCGCGGTGGCATACCACGCCGACCCGCCGGACGAGCATGA
AGGGACCGATTTGCGGGATATTATCGGCCAGCAGCAGGCCAAGCGAGCGCTGGAAATCGCCGCCGCCGGCGGCCATAACC
TGCTGCTGATGGGGCCGCCGGGCACCGGCAAAACCATGCTGGCCAGCAGGCTGCCCGGGTTGTTGCCGGCCCTGGACGAT
CACGAGGCTATCGAAACCGCCGCCATCGCCAGTCTGATAAGTGTCGATAATGCCCGCCGGCACTGGCGCCGGCGTCCCTT
TCGCGCCCCCCATCACAGCGCCACATTGGCGGCGTTGGTGGGGGGCGGCGCCATACCGCGACCCGGGGAAGTTTCCCTGG
CCCATAACGGGGTACTGTTCCTTGATGAACTGCCGGAATTCCAGCGGCGGGTGCTGGATGCGTTGCGCGAGCCGCTGGAG
GCCGGCGAAATCAACATTTCCCGCGCCCAGGCCAAGGTCCTCTACCCGGCGCGCTTTCAGCTGATCGGAGCGATGAACCC
CAGCCCTTCCGGTGATTATCAAGGCGTCCACAGCCGCAGCGGCCCCCAGCAGACCTTGCGCTACCTGAACCGTTTATCCG
GTCCGTTCCTCGATCGTTTCGATATGTCCATTGAAGTGCCGCTATTGCCTCCAGGCATGCTGCGTCAGCCGGGTACGGAC
GGCGAACAGAGCGCGACGGTGCGGGAACGGGTGCGGATAGCCCGGCTGGCGCAGTTGGGCCGTTGTCAGAAAATCAATGC
ACATATGAATAATCAGGAGGTAAGCGTTTATTGTCGCCTGGACGAAGCTGAAGCGATTTTTTTGGAAAATATCATGGAAA
AACTCGGACTTTCCGCGCGGGCCTGGCACCGAACGCTGAAGGTCGCCCGTACGCTGGCTGACTTGGCCGGCGAGCCGGAG
ATACGGCGTTGCCATTTGGCGGAAGCCGTCAGCTATCGCAGTATCGACCGCTTACTGCAACAACTTTGGCAACAAATGGA
ATAA

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (401-493)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-389)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	61.782	99.606	0.615
comM	Haemophilus influenzae Rd KW20	61.265	99.803	0.611
comM	Glaesserella parasuis strain SC1401	61.144	100	0.611
comM	Vibrio campbellii strain DS40M4	59.604	99.606	0.594
comM	Legionella pneumophila str. Paris	49.597	97.83	0.485
comM	Legionella pneumophila strain ERS1305867	49.597	97.83	0.485
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.243	100	0.46